A symmetry-preserving second-order time-accurate PISO-based method

A new conservative symmetry-preserving second-order time-accurate PISO-based pressure-velocity coupling for solving the incompressible Navier-Stokes equations on unstructured collocated grids is presented in this paper. This new method for implicit time stepping is an extension of the conservative symmetry-preserving incremental-pressure projection method for explicit time stepping and unstructured collocated meshes of Trias et al. [35]. In order to assess and compare both methods, we have implemented them within one unified solver in the open source code OpenFOAM where we use a Butcher array to prescribe the Runge-Kutta method. Thus, by changing the entries of the Butcher array, explicit and diagonally implicit Runge-Kutta schemes can be combined into one solver. We assess the energy conservation properties of the implemented discretisation methods and the temporal consistency of the selected Runge-Kutta schemes using Taylor-Green vortex and lid-driven cavity flow test cases. Finally, we use a more complex turbulent channel flow test case in order to further assess the performance of the presented new conservative symmetry-preserving incremental-pressure PISO-based method. Although both implemented methods are based on a symmetry-preserving discretisation, we show they still produce a small amount of numerical dissipation when the total pressure is directly solved from a Poisson equation. When an incremental-pressure approach is used, where a pressure correction is solved from a Poisson equation, both methods are effectively fully-conservative. For high-fidelity simulations of incompressible turbulent flows, it is highly desirable to use fully-conservative methods. For such simulations, the presented numerical methods are therefore expected to have large added value, since they pave the way for the execution of truly energy-conservative high-fidelity simulations in complex geometries. Furthermore, both methods are implemented in OpenFOAM, which is widely used within the CFD community, so that a large part of this community can benefit from the developed and implemented numerical methods

Single-top t-channel hadroproduction in the four-flavour scheme with POWHEG and aMC@NLO

We present results for the QCD next-to-leading order (NLO) calculation of single-top t-channel production in the 4-flavour scheme, interfaced to Parton Shower (PS) Monte Carlo programs according to the POWHEG and MC@NLO methods. Comparisons between the two methods, as well as with the corresponding process in the 5-flavour scheme are presented. For the first time results for typical kinematic distributions of the spectator-b jet are presented in an NLO+PS approach.Comment: 16+1 pages, 8 figures, matches version accepted for publication in JHE

Reach the Bottom Line of the Sbottom Search

We propose a new search strategy for directly-produced sbottoms at the LHC with a small mass splitting between the sbottom and its decayed stable neutralino. Our search strategy is based on boosting sbottoms through an energetic initial state radiation jet. In the final state, we require a large missing transverse energy and one or two b-jets besides the initial state radiation jet. We also define a few kinematic variables to further increase the discovery reach. For the case that the sbottom mainly decays into the bottom quark and the stable neutralino, we have found that even for a mass splitting as small as 10 GeV sbottoms with masses up to around 400 GeV can be excluded at the 95% confidence level with 20 inverse femtobarn data at the 8 TeV LHC.Comment: 16 pages, 6 figure

Z' signals in polarised top-antitop final states

We study the sensitivity of top-antitop samples produced at all energy stages of the Large Hadron Collider (LHC) to the nature of an underlying Z' boson, in presence of full tree level standard model (SM) background effects and relative interferences. We concentrate on differential mass spectra as well as both spatial and spin asymmetries thereby demonstrating that exploiting combinations of these observables will enable one to distinguish between sequential Z's and those pertaining to Left-Right symmetric models as well as E6 inspired ones, assuming realistic final state reconstruction efficiencies and error estimates.Comment: 21 pages, 6 colour figures, 10 table

Photon Radiation with MadDipole

We present the automation of a subtraction method for photon radiation using the dipole formalism within the MadGraph framework. The subtraction terms are implemented both in dimensional regularization and mass regularization for massless and massive cases and non-collinear-safe observables are accounted for.Comment: 23 pages, 2 figures, minor additions, references added, version published in JHE

Angular distributions in tt¯H(H→bb¯) reconstructed events at the LHC

The associated production of a Higgs boson and a top-quark pair, tt¯H, in proton-proton collisions is addressed in this paper for a center of mass energy of 13TeV at the LHC. Dileptonic final states of tt¯H events with two oppositely charged leptons and four jets from the decays t→bW+→bℓ+νℓ, t¯→b¯W−→b¯ℓ−ν¯ℓ and h→bb¯, are used. Signal events, generated with MadGraph5_aMC@NLO, are fully reconstructed by applying a kinematic fit. New angular distributions of the decay products as well as angular asymmetries are explored in order to improve discrimination of tt¯H signal events over the dominant irreducible background contribution, tt¯bb¯. Even after the full kinematic fit reconstruction of the events, the proposed angular distributions and asymmetries are still quite different in the tt¯H signal and the dominant background (tt¯bb¯).This work was partially supported by Fundação para a Ciência e Tecnologia, FCT (projects CERN/FP/123619/2011 and EXPL/FIS-NUC/1705/2013, grants SFRH/BI/52524/2014 and SFRH/BD/73438/2010, and contracts IF/00050/2013 and IF/00014/2012). The work of M.C.N. Fiolhais was supported by LIP-Laboratório de Instrumentação e Física Experimental de Partículas, Portugal (grant PestIC/FIS/LA007/2013). The work of R.S. is supported in part by FCT under contract PTDC/FIS/117951/2010. Special thanks go to Juan Antonio Aguilar-Saavedra for all the fruitful discussions and a long term collaboration

Micro-costing diagnostics in oncology:from single-gene testing to whole- genome sequencing

Purpose: Predictive diagnostics play an increasingly important role in personalized medicine for cancer treatment. Whole-genome sequencing (WGS)-based treatment selection is expected to rapidly increase worldwide. This study aimed to calculate and compare the total cost of currently used diagnostic techniques and of WGS in treatment of non-small cell lung carcinoma (NSCLC), melanoma, colorectal cancer (CRC), and gastrointestinal stromal tumor (GIST) in the Netherlands. Methods: The activity-based costing (ABC) method was conducted to calculate total cost of included diagnostic techniques based on data provided by Dutch pathology laboratories and the Dutch-centralized cancer WGS facility. Costs were allocated to four categories: capital costs, maintenance costs, software costs, and operational costs. Results: The total cost per cancer patient per technique varied from € 58 (Sanger sequencing, three amplicons) to € 2925 (paired tumor-normal WGS). The operational costs accounted for the vast majority (over 90%) of the total per cancer patient technique costs. Conclusion: This study outlined in detail all costing aspects and cost prices of current and new diagnostic modalities used in treatment of NSCLC, melanoma, CRC, and GIST in the Netherlands. Detailed cost differences and value comparisons between these diagnostic techniques enable future economic evaluations to support decision-making

A new view of electrochemistry at highly oriented pyrolytic graphite

Major new insights on electrochemical processes at graphite electrodes are reported, following extensive investigations of two of the most studied redox couples, Fe(CN)64–/3– and Ru(NH3)63+/2+. Experiments have been carried out on five different grades of highly oriented pyrolytic graphite (HOPG) that vary in step-edge height and surface coverage. Significantly, the same electrochemical characteristic is observed on all surfaces, independent of surface quality: initial cyclic voltammetry (CV) is close to reversible on freshly cleaved surfaces (>400 measurements for Fe(CN)64–/3– and >100 for Ru(NH3)63+/2+), in marked contrast to previous studies that have found very slow electron transfer (ET) kinetics, with an interpretation that ET only occurs at step edges. Significantly, high spatial resolution electrochemical imaging with scanning electrochemical cell microscopy, on the highest quality mechanically cleaved HOPG, demonstrates definitively that the pristine basal surface supports fast ET, and that ET is not confined to step edges. However, the history of the HOPG surface strongly influences the electrochemical behavior. Thus, Fe(CN)64–/3– shows markedly diminished ET kinetics with either extended exposure of the HOPG surface to the ambient environment or repeated CV measurements. In situ atomic force microscopy (AFM) reveals that the deterioration in apparent ET kinetics is coupled with the deposition of material on the HOPG electrode, while conducting-AFM highlights that, after cleaving, the local surface conductivity of HOPG deteriorates significantly with time. These observations and new insights are not only important for graphite, but have significant implications for electrochemistry at related carbon materials such as graphene and carbon nanotubes