Study of in vitro transcriptional binding effects and noise using constitutive promoters combined with UP element sequences in Escherichia coli

Background UP elements (upstream element) are DNA sequences upstream of a promoter that interact with the α-subunit of RNA polymerase (RNAP) and can affect transcription by altering the binding RNAP to DNA. However, details of UP element and binding affinity effects on transcriptional strength are unclear. Results Here, we investigated the effects of UP element sequences on gene transcription, binding affinity, and gene expression noise. Addition of UP elements resulted in increased gene expression (maximum 95.7-fold increase) and reduced gene expression noise (8.51-fold reduction). Half UP element sequences at the proximal subsite has little effect on transcriptional strength despite increasing binding affinity by 2.28-fold. In vitro binding assays were used to determine dissociation constants (Kd) and in the in vitro system, the full range of gene expression occurs in a small range of dissociation constants (25 nM \u3c Kd \u3c 45 nM) indicating that transcriptional strength is highly sensitive to small changes in binding affinity. Conclusions These results demonstrate the utility of UP elements and provide mechanistic insight into the functional relationship between binding affinity and transcription. Given the centrality of gene expression via transcription to biology, additional insight into transcriptional mechanisms can foster both fundamental and applied research. In particular, knowledge of the DNA sequence-specific effects on expression strength can aid in promoter engineering for different organisms and for metabolic engineering to balance pathway fluxes

Incentive contracting - An annotated and classified modern bibliography

Incentive contracts bibliograph

Leptogenesis from Soft Supersymmetry Breaking (Soft Leptogenesis)

Soft leptogenesis is a scenario in which the cosmic baryon asymmetry is produced from a lepton asymmetry generated in the decays of heavy sneutrinos (the partners of the singlet neutrinos of the seesaw) and where the relevant sources of CP violation are the complex phases of soft supersymmetry-breaking terms. We explain the motivations for soft leptogenesis, and review its basic ingredients: the different CP-violating contributions, the crucial role played by thermal corrections, and the enhancement of the efficiency from lepton flavour effects. We also discuss the high temperature regime $T > 10^7$ GeV in which the cosmic baryon asymmetry originates from an initial asymmetry of an anomalous $R$-charge, and soft leptogenesis reembodies in $R$-genesis.Comment: References updated. Some minor corrections to match the published versio

Theoretical studies of solar-pumped lasers

The power output of a black body solar-pumped laser as a function of time (computer graphic solutions) and under steady state conditions (analytic conditions); computer analyses of polymerization using lasers; and metallic sodium as a laser medium were studied

Magnetization Plateau of Classical Ising Model on Shastry-Sutherland Lattice

We study the magnetization for the classical antiferromagnetic Ising model on the Shastry-Sutherland lattice using the tensor renormalization group approach. With this method, one can probe large spin systems with little finite-size effect. For a range of temperature and coupling constant, a single magnetization plateau at one third of the saturation value is found. We investigate the dependence of the plateau width on temperature and on the strength of magnetic frustration. Furthermore, the spin configuration of the plateau state at zero temperature is determined.Comment: 6 pages, 8 figure

Theoretcial studies of solar-pumped lasers

A method of pumping a COhZ laser by a hot cavity was demonstrated. The cavity, heated by solar radiation, should increase the efficiency of solar pumped lasers used for energy conversion. Kinetic modeling is used to examine the behavior of such a COhZ laser. The kinetic equations are solved numerically vs. time and, in addition, steady state solutions are obtained analytically. The effect of gas heating filling the lower laser level is included. The output power and laser efficiency are obtained as functions of black body temperature and gas ratios (COhZ-He-Ar) and pressures. The values are compared with experimental results

Theoretical studies of solar-pumped lasers

In any lasing medium the emission wavelength should be chosen where there is little self absorption. As emission and absorption spectra for metallic vapors did not seem available, therefore, estimates were made of these cross sections for sodium vapor as functions of wavelength. Although absolute values were not obtained, information on where the emission wavelength should occur became evident. The method of obtaining quantities proportional to the cross sections versus wavelength is outlined. A further comparison based on alternative expressions for the absorption and emission cross sections over a limited wavelength range is made