Comparing imaging, acoustics, and radar to monitor Leach’s storm-petrel colonies

Seabirds are integral components of marine ecosystems and, with many populations globally threatened, there is a critical need for effective and scalable seabird monitoring strategies. Many seabird species nest in burrows, which can make traditional monitoring methods costly, infeasible, or damaging to nesting habitats. Traditional burrow occupancy surveys, where possible, can occur infrequently and therefore lead to an incomplete understanding of population trends. For example, in Oregon, during the last three decades there have been large changes in the abundance of Leach’s storm-petrels (Hydrobates leucorhoa), which included drastic declines at some colonies. Unfortunately, traditional monitoring failed to capture the timing and magnitude of change, limiting managers’ ability to determine causes of the decline and curtailing management options. New, easily repeatable methods of quantifying relative abundance are needed. For this study, we tested three methods of remote monitoring: passive acoustic monitoring, time-lapse cameras, and radar. Abundance indices derived from acoustics and imagery: call rates, acoustic energy, and counts were significantly related to traditional estimates of burrow occupancy of Leach’s storm-petrels. Due to sampling limitations, we were unable to compare radar to burrow occupancy. Image counts were significantly correlated with all other indices, including radar, while indices derived from acoustics and radar were not correlated. Acoustic data likely reflect different aspects of the population and hold the potential for the further development of indices to disentangle phenology, attendance of breeding birds, and reproductive success. We found that image counts are comparable with standard methods (e.g., radar) in producing annual abundance indices. We recommend that managers consider a sampling scheme that incorporates both acoustics and imaging, but for sites inaccessible to humans, radar remains the sole option. Implementation of acoustic and camera based monitoring programs will provide much needed information for a vulnerable group of seabirds

Management Implications of the Biodiversity and Socio-Economic Impacts of Shrimp Trawler By-Catch in Bahía de Kino, Sonora, México

The shrimp fishery is the most economically important fishery in Mexico. The trawler-based portion of this fishery results in high rates of by-catch. This study quantifies and describes the biodiversity of by-catch associated with trawling in the Bahía de Kino region of Sonora, Mexico. Data were collected from 55 trawls, on six boats, over 14 nights, during November of 2003, 2004, 2006–2009. By-catch rates within trawl samples averaged 85.9% measured by weight. A total of 183 by-catch species were identified during the course of this study, including 97 species of bony fish from 43 families, 19 species of elasmobranchs from 12 families, 66 species of invertebrates from eight phyla, and one species of marine turtle; seven of the documented by-catch species are listed on the IUCN Red List, CITES, or the Mexican NOM-059-ECOL-2010; 35 species documented in the by-catch are also targeted by local artisanal fishers. Some of the species frequently captured as juveniles in the by-catch are economically important to small-scale fishers in the region, and are particularly sensitive to overexploitation due to their life histories. This study highlights the need for further research quantifying the impacts of high levels of by-catch upon small-scale fishing economies in the region and presents strong ecological and economic rationale for by-catch management within the shrimp fishery of the Gulf of California. Site-specific by-catch management plans should be piloted in the Bahía de Kino region to address the growing momentum in national and international fisheries policy regimes toward the reduction of by-catch in shrimp fisheries

Locations of 53 sampled trawls in the Bahía de Kino region, Sonora, Mexico, 2003–2009.

<p>Start locations of sampled trawls between 2003 and 2009. The sampled trawls occurred between 15.2 m and 39 m, typically along a sandy substrate.</p

By-catch species listed under Mexican endangered species legislation, the IUCN Red List, and/or CITES.

<p>By-catch species listed under Mexican endangered species legislation, the IUCN Red List, and/or CITES.</p

Rate of by-catch by set, from 33 samples from eight nights in the Bahía de Kino region, during 2004–2009.

<p>There is a significant difference in the average by-catch rate when the time of the trawls are compared (F = 6.9, p<.01). The first trawl of each night (light blue bars) sampled had the highest rate of by-catch, while set 3 (yellow bars) had the lowest rate. The third trawl of the night began on average between 3am and 4am.</p

Plasticity of foraging behaviors in response to diverse environmental conditions

Due to rapidly changing global environmental conditions, many animals are now experiencing concurrent changes in both resource availability and the foraging cues associated with finding those resources. By employing flexible, plastic foraging strategies that use different types of environmental foraging cues, animals could adapt to these novel future environments. To evaluate the extent to which such flexibility and plasticity exist, we analyzed a large dataset of a clade (Sulidae; the boobies) of widespread aerial tropical predators that feed in highly variable marine habitats. These surface foragers are typical of many ocean predators that face dynamic and patchy foraging environments and use a combination of static and ephemeral oceanographic features to locate prey. We compared foraging habitats and behaviors of four species at seven colonies in the eastern and central Pacific Ocean that varied greatly in depth, topography, and primary productivity. Foraging behaviors, recorded by GPS‐tracking tags, were compared to remotely sensed environmental features, to characterize habitat‐behavior interactions. K‐means clustering grouped environmental characteristics into five habitat clusters across the seven sites. We found that boobies relied on a combination of static and ephemeral cues, especially depth, chlorophyll‐a concentrations, and sea surface height (ocean surface topography). Notably, foraging behaviors were strongly predicted by local oceanographic habitats across species and sites, suggesting a high degree of behavioral plasticity in use of different foraging cues. Flexibility allows these top predators to adapt to, and exploit, static and ephemeral oceanic features. Plasticity may well facilitate these species, and other similarly dynamic foragers, to cope with increasingly changing environmental conditions

Persistent annual migration patterns of a specialist seabird

Specialization can make animals vulnerable to rapid environmental changes. For long-lived seabirds, foraging specialization may make individuals especially sensitive, as climatic changes are currently occurring over the course of one lifetime. The Bering Sea is a dynamic subarctic and arctic ecosystem where windblown sea ice mediates annual productivity and subsequent pathways to upper trophic levels. Red-legged kittiwakes Rissa brevirostris are endemic surface foraging seabirds specializing on myctophid fishes during reproduction. Their degree of specialization outside the breeding season is less understood. We examined their non-breeding ecology (migration, distribution, isotopic niche) during 4 winters with varying sea ice extent. Although we found annual variation in core distributions, diets (as reflected in feather stable isotope signatures), and outbound migratory timing, the winter range of red-legged kittiwakes was restricted to the western regions of the Bering Sea and North Pacific. Contrary to expectations, sea ice did not limit distributions in the Bering Sea in 3 yr: e.g. sea ice associations (\u3c100 km) were infrequent (8.7% mo-1). Yet, their wintering range often overlapped with areas of seasonal ice cover, suggesting range-wide use of sea ice ecosystems. Stress levels measured by corticosterone in feathers were generally low. However, birds that concentrated in the Bering Sea in February had higher stress levels and fed at a lower trophic level than those in the western Aleutians and western subarctic. As conditions change, this persistence in wintering locations, while incurring differential stress levels, may contribute to rapid population fluctuations as has been observed in the recent past

Audio tagging of avian dawn chorus recordings in California, Oregon and Washington

Declines in biodiversity and ecosystem health due to climate change are raising urgent concerns. In response, large-scale multispecies monitoring programmes are being implemented that increasingly adopt sensor-based approaches such as acoustic recording. These approaches rely heavily on ecological data science. However, developing reliable algorithms for processing sensor-based data relies heavily on labelled datasets of sufficient quality and quantity. We present a dataset of 1,575 dawn chorus soundscape recordings, 141 being fully annotated (n = 32,994 annotations) with avian, mammalian and amphibian vocalisations. The remaining recordings were included to facilitate novel research applications. These recordings are paired with 48 site-level climatic, forest structure and topographic covariates. This dataset provides a valuable resource to researchers developing acoustic classification algorithms or studying biodiversity and wildlife behaviour and its relationship to environmental gradients. The dawn chorus recordings were collected as part of a long-term Northern Spotted Owl monitoring program; this demonstrates the complementary value of harnessing existing monitoring efforts to strengthen biodiversity sampling.This dataset of dawn chorus soundscape recordings is one of the few open-access acoustic datasets annotated with non-biotic and both interspecific (across species) and intraspecific (within species) bird, mammal and amphibian sonotypes and the first that is paired with climatic, forest structure and topographical covariates extracted at recorder locations. This makes it a valuable resource for researchers studying the dawn chorus and its relationship to the environment

Audio tagging of avian dawn chorus recordings in California, Oregon and Washington

Declines in biodiversity and ecosystem health due to climate change are raising urgent concerns. In response, large-scale multispecies monitoring programmes are being implemented that increasingly adopt sensor-based approaches such as acoustic recording. These approaches rely heavily on ecological data science. However, developing reliable algorithms for processing sensor-based data relies heavily on labelled datasets of sufficient quality and quantity. We present a dataset of 1,575 dawn chorus soundscape recordings, 141 being fully annotated (n = 32,994 annotations) with avian, mammalian and amphibian vocalisations. The remaining recordings were included to facilitate novel research applications. These recordings are paired with 48 site-level climatic, forest structure and topographic covariates. This dataset provides a valuable resource to researchers developing acoustic classification algorithms or studying biodiversity and wildlife behaviour and its relationship to environmental gradients. The dawn chorus recordings were collected as part of a long-term Northern Spotted Owl monitoring program; this demonstrates the complementary value of harnessing existing monitoring efforts to strengthen biodiversity sampling.This dataset of dawn chorus soundscape recordings is one of the few open-access acoustic datasets annotated with non-biotic and both interspecific (across species) and intraspecific (within species) bird, mammal and amphibian sonotypes and the first that is paired with climatic, forest structure and topographical covariates extracted at recorder locations. This makes it a valuable resource for researchers studying the dawn chorus and its relationship to the environment