14 research outputs found

    Litter Breakdown and Microbial Succession on Two Submerged Leaf Species in a Small Forested Stream

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    <div><p>Microbial succession during leaf breakdown was investigated in a small forested stream in west-central Georgia, USA, using multiple culture-independent techniques. Red maple (<i>Acer rubrum</i>) and water oak (<i>Quercus nigra</i>) leaf litter were incubated <i>in situ</i> for 128 days, and litter breakdown was quantified by ash-free dry mass (AFDM) method and microbial assemblage composition using phospholipid fatty acid analysis (PLFA), ribosomal intergenic spacer analysis (RISA), denaturing gradient gel electrophoresis (DGGE), and bar-coded next-generation sequencing of 16S rRNA gene amplicons. Leaf breakdown was faster for red maple than water oak. PLFA revealed a significant time effect on microbial lipid profiles for both leaf species. Microbial assemblages on maple contained a higher relative abundance of bacterial lipids than oak, and oak microbial assemblages contained higher relative abundance of fungal lipids than maple. RISA showed that incubation time was more important in structuring bacterial assemblages than leaf physicochemistry. DGGE profiles revealed high variability in bacterial assemblages over time, and sequencing of DGGE-resolved amplicons indicated several taxa present on degrading litter. Next-generation sequencing revealed temporal shifts in dominant taxa within the phylum <i>Proteobacteria</i>, whereas γ-<i>Proteobacteria</i> dominated pre-immersion and α- and β-<i>Proteobacteria</i> dominated after 1 month of instream incubation; the latter groups contain taxa that are predicted to be capable of using organic material to fuel further breakdown. Our results suggest that incubation time is more important than leaf species physicochemistry in influencing leaf litter microbial assemblage composition, and indicate the need for investigation into seasonal and temporal dynamics of leaf litter microbial assemblage succession.</p></div

    Comparison of alpha diversity metrics calculated for maple and oak leaf litter bacterial assemblages from paired-end sequencing results following 0, 32, and 128 days instream incubation at an even sampling depth of 4260 sequences.

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    <p>Superscript letters beside metric values represent Tukey’s multiple comparison groupings for each metric (α = 0.05).</p><p>Comparison of alpha diversity metrics calculated for maple and oak leaf litter bacterial assemblages from paired-end sequencing results following 0, 32, and 128 days instream incubation at an even sampling depth of 4260 sequences.</p

    Mean (± 1SE) ash free dry mass (AFDM) remaining over time during breakdown of red maple (closed circles), water oak (open circles), and mixed litter (inverted solid triangle) leaf packs incubated for 128 d in Kings Mill Creek, GA, USA.

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    <p>Mean (± 1SE) ash free dry mass (AFDM) remaining over time during breakdown of red maple (closed circles), water oak (open circles), and mixed litter (inverted solid triangle) leaf packs incubated for 128 d in Kings Mill Creek, GA, USA.</p

    Dendrogram of ribosomal intergenic spacer analysis (RISA) electropherograms displaying bacterial assemblage similarities calculated using Ward’s method based on Jaccard’s similarity coefficient.

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    <p>Dendrogram of ribosomal intergenic spacer analysis (RISA) electropherograms displaying bacterial assemblage similarities calculated using Ward’s method based on Jaccard’s similarity coefficient.</p
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