Nitrogen Retention in Headwater Streams: The Influence of Groundwater-Surface Water Exchange

Groundwater-surface water (GW-SW) interaction lengthens hydraulic residence times, increases contact between solutes and biologically active surfaces, and often creates a gradient of redox conditions conducive to an array of biogeochemical processes. As such, the interaction of hydraulic patterns and biogeochemical activity is suspected to be an important determinant of elemental spiraling in streams. Hydrologic interactions may be particularly important in headwater streams, where the extent of the GW-SW mixing environment (i.e., hyporheic zone) is proportionately greater than in larger streams. From our current understanding of stream ecosystem function, we discuss nitrogen (N) spiraling, present a conceptual model of N retention in streams, and use both of these issues to generate specific research questions and testable hypotheses regarding N dynamics in streams

Membrane receptors are not required to deliver granzyme B during killer cell attack.

Granzyme B (GzmB), a serine protease of cytotoxic T lymphocytes and natural killer (NK) cells, induces apoptosis by caspase activation after crossing the plasma membrane of target cells. The mechanism of this translocation during killer cell attack, however, is not understood. Killer cells release GzmB and the membrane-disturbing perforin at the contact site after target recognition. Receptor-mediated import of glycosylated GzmB and release from endosomes were suggested, but the role of the cation-independent mannose 6-phosphate receptor was recently refuted. Using recombinant nonglycosylated GzmB, we observed binding of GzmB to cellular membranes in a cell type–dependent manner. The basis and functional impact of surface binding were clarified. GzmB binding was correlated with the surface density of heparan sulfate chains, was eliminated on treatment of target cells with heparinase III or sodium chlorate, and was completely blocked by an excess of catalytically inactive GzmB or GzmK. Although heparan sulfate–bound GzmB was taken up rapidly into intracellular lysosomal compartments, neither of the treatments had an inhibitory influence on apoptosis induced by externally added streptolysin O and GzmB or by natural killer cells. We conclude that membrane receptors for GzmB on target cells are not crucial for killer cell–mediated apoptosis

Efficient Algorithms for Eulerian Extension

Eulerian extension problems aim at making a given (directed) (multi-)graph Eulerian by adding a minimum-cost set of edges (arcs). These problems have natural applications in scheduling and routing and are closely related to the Chinese Postman and Rural Postman problems. Our main result is to show that the NP-hard Weighted Multigraph Eulerian Extension is fixed-parameter tractable with respect to the number k of extension edges (arcs). For an n-vertex multigraph, the corresponding running time amounts to O(4 k · n 3). This implies a fixed-parameter tractability result for the “equivalent” Rural Postman problem. In addition, we present several polynomial-time algorithms for natural Eulerian extension problems