Probing the pc- and kpc-scale environment of the powerful radio galaxy Hercules A

We present the kpc-scale behaviour of the powerful extragalactic radio source Hercules A and the behaviour of the intracluster gas in which the radio source is situated. We have found that Hercules A exhibits a strong Laing-Garrington effect. The X-ray observations have revealed an extended X-ray emission elongated along the radio galaxy axis. The estimated temperature of the cluster is kT = 2.45 keV and the central electron density is no~7.8 x 10^(-3) cm^(-3) which reveals a hot, dense environment in which Hercules A is situated. From the combined study of the radio and X-ray data we have estimated a central value of 3<Bo (muG)<9. We also present the most recent results from the analysis of the radio data on the pc-scale structure of the radio galaxy, observed at 18 cm by the EVN-MERLIN array. A faint but compact radio source, coincident with the optical centre of Hercules A was detected by the EVN at 18 mas resolution. The total flux density of the EVN core is 14.6 mJy. Its angular size is 18 x 7 mas with a position angle of ~139 degrees. There is also evidence for extended emission in the NW-SE direction, most probably from the eastern pc-scale jet. If this is true then there is a misalignment between the direction of the pc-eastern and the aligned kpc-scale jets of ~35 degrees.Comment: 7 pages, 2 figures, Submitted to PAS

Fluid/solid transition in a hard-core system

We prove that a system of particles in the plane, interacting only with a certain hard-core constraint, undergoes a fluid/solid phase transition

Achieving Good Angular Resolution in 3D Arc Diagrams

We study a three-dimensional analogue to the well-known graph visualization approach known as arc diagrams. We provide several algorithms that achieve good angular resolution for 3D arc diagrams, even for cases when the arcs must project to a given 2D straight-line drawing of the input graph. Our methods make use of various graph coloring algorithms, including an algorithm for a new coloring problem, which we call localized edge coloring.Comment: 12 pages, 5 figures; to appear at the 21st International Symposium on Graph Drawing (GD 2013

Robust Algorithm to Generate a Diverse Class of Dense Disordered and Ordered Sphere Packings via Linear Programming

We have formulated the problem of generating periodic dense paritcle packings as an optimization problem called the Adaptive Shrinking Cell (ASC) formulation [S. Torquato and Y. Jiao, Phys. Rev. E {\bf 80}, 041104 (2009)]. Because the objective function and impenetrability constraints can be exactly linearized for sphere packings with a size distribution in $d$-dimensional Euclidean space $\mathbb{R}^d$, it is most suitable and natural to solve the corresponding ASC optimization problem using sequential linear programming (SLP) techniques. We implement an SLP solution to produce robustly a wide spectrum of jammed sphere packings in $\mathbb{R}^d$ for $d=2,3,4,5$ and $6$ with a diversity of disorder and densities up to the maximally densities. This deterministic algorithm can produce a broad range of inherent structures besides the usual disordered ones with very small computational cost by tuning the radius of the {\it influence sphere}. In three dimensions, we show that it can produce with high probability a variety of strictly jammed packings with a packing density anywhere in the wide range $[0.6, 0.7408...]$. We also apply the algorithm to generate various disordered packings as well as the maximally dense packings for $d=2,3, 4,5$ and 6. Compared to the LS procedure, our SLP protocol is able to ensure that the final packings are truly jammed, produces disordered jammed packings with anomalously low densities, and is appreciably more robust and computationally faster at generating maximally dense packings, especially as the space dimension increases.Comment: 34 pages, 6 figure

Images of an equatorial outflow in SS433

We have imaged the X-ray binary SS433 with unprecedented Fourier-plane coverage at 6cm using simultaneously the VLBA, MERLIN, and the VLA, and also at 20cm with the VLBA. At both wavelengths we have securely detected smooth, low-surface brightness emission having the appearance of a `ruff' or collar attached perpendicularly to the well-studied knotty jets in this system, extending over at least a few hundred AU. We interpret this smooth emission as a wind-like outflow from the binary, and discuss its implications for the present evolutionary stage of this system.Comment: Accepted by ApJ Letter

Vibrational signature of broken chemical order in a GeS2 glass: a molecular dynamics simulation

Using density functional molecular dynamics simulations, we analyze the broken chemical order in a GeS$_2$ glass and its impact on the dynamical properties of the glass through the in-depth study of the vibrational eigenvectors. We find homopolar bonds and the frequencies of the corresponding modes are in agreement with experimental data. Localized S-S modes and 3-fold coordinated sulfur atoms are found to be at the origin of specific Raman peaks whose origin was not previously clear. Through the ring size statistics we find, during the glass formation, a conversion of 3-membered rings into larger units but also into 2-membered rings whose vibrational signature is in agreement with experiments.Comment: 11 pages, 8 figures; to appear in Phys. Rev.

Trichostatin A-induced histone acetylation causes decondensation of interphase chromatin

The effect of trichostatin A (TSA)-induced histone acetylation on the interphase chromatin structure was visualized in vivo with a HeLa cell line stably expressing histone H2A, which was fused to enhanced yellow fluorescent protein. The globally increased histone acetylation caused a reversible decondensation of dense chromatin regions and led to a more homogeneous distribution. These structural changes were quantified by image correlation spectroscopy and by spatially resolved scaling analysis. The image analysis revealed that a chromatin reorganization on a length scale from 200 nm to >1 μm was induced consistent with the opening of condensed chromatin domains containing several Mb of DNA. The observed conformation changes could be assigned to the folding of chromatin during G1 phase by characterizing the effect of TSA on cell cycle progression and developing a protocol that allowed the identification of G1 phase cells on microscope coverslips. An analysis by flow cytometry showed that the addition of TSA led to a significant arrest of cells in S phase and induced apoptosis. The concentration dependence of both processes was studied

Basic Understanding of Condensed Phases of Matter via Packing Models

Packing problems have been a source of fascination for millenia and their study has produced a rich literature that spans numerous disciplines. Investigations of hard-particle packing models have provided basic insights into the structure and bulk properties of condensed phases of matter, including low-temperature states (e.g., molecular and colloidal liquids, crystals and glasses), multiphase heterogeneous media, granular media, and biological systems. The densest packings are of great interest in pure mathematics, including discrete geometry and number theory. This perspective reviews pertinent theoretical and computational literature concerning the equilibrium, metastable and nonequilibrium packings of hard-particle packings in various Euclidean space dimensions. In the case of jammed packings, emphasis will be placed on the "geometric-structure" approach, which provides a powerful and unified means to quantitatively characterize individual packings via jamming categories and "order" maps. It incorporates extremal jammed states, including the densest packings, maximally random jammed states, and lowest-density jammed structures. Packings of identical spheres, spheres with a size distribution, and nonspherical particles are also surveyed. We close this review by identifying challenges and open questions for future research.Comment: 33 pages, 20 figures, Invited "Perspective" submitted to the Journal of Chemical Physics. arXiv admin note: text overlap with arXiv:1008.298