VANTED: A system for advanced data analysis and visualization in the context of biological networks-1

<p><b>Copyright information:</b></p><p>Taken from "VANTED: A system for advanced data analysis and visualization in the context of biological networks"</p><p>BMC Bioinformatics 2006;7():109-109.</p><p>Published online 6 Mar 2006</p><p>PMCID:PMC1413562.</p><p>Copyright © 2006 Junker et al; licensee BioMed Central Ltd.</p> file format, e.g. MS-Office Excel, Open Office and Gnumeric. Information about the experiment, a description of the genotypes or sample conditions, and finally the data values including replicate number, sample time, measuring tool, and unit may be filled in. The template is then imported into VANTED for data visualization and analysis

VANTED: A system for advanced data analysis and visualization in the context of biological networks-4

<p><b>Copyright information:</b></p><p>Taken from "VANTED: A system for advanced data analysis and visualization in the context of biological networks"</p><p>BMC Bioinformatics 2006;7():109-109.</p><p>Published online 6 Mar 2006</p><p>PMCID:PMC1413562.</p><p>Copyright © 2006 Junker et al; licensee BioMed Central Ltd.</p>east invertase in an inducible manner [33] were mapped onto nodes before a correlation analysis was performed. See legend of Figure 3 for details on the diagrams. Positive and negative correlations are visualized by blue and red edges, respectively. The intensity of the edge depends on the value of Pearson's product-moment correlation coefficient. A combination of circular and force-directed layout was performed for better visualization. On the side-panel, a scatter plot is shown for the four metabolites that are marked with the small red squares in the network. Samples are color coded depending on the plant line. In the status bar, information is displayed concerning the correlation edge that is marked with yellow squares in the network (between D-Fructose 6-phosphate and D-Glucose 6-phosphate)

VANTED: A system for advanced data analysis and visualization in the context of biological networks-3

<p><b>Copyright information:</b></p><p>Taken from "VANTED: A system for advanced data analysis and visualization in the context of biological networks"</p><p>BMC Bioinformatics 2006;7():109-109.</p><p>Published online 6 Mar 2006</p><p>PMCID:PMC1413562.</p><p>Copyright © 2006 Junker et al; licensee BioMed Central Ltd.</p>nzymes present in the model plant as predicted from sequence information are shown in green. Selected enzyme activities and metabolite concentrations from wildtype potato tubers, and tubers expressing a yeast invertase either in an inducible or constitutive manner [33] were mapped on the pathway (which for better visualization was slightly modified using the built-in graph editor of VANTED). See legend of Figure 3 for details on the diagrams. The number of matches between the data set and all KEGG pathways is shown in the first number next to the pathway entry. The second number shows the number of enzymes in a pathway, the last the total number of nodes in the pathway (enzymes, metabolites, and links to other pathways)

VANTED: A system for advanced data analysis and visualization in the context of biological networks-5

<p><b>Copyright information:</b></p><p>Taken from "VANTED: A system for advanced data analysis and visualization in the context of biological networks"</p><p>BMC Bioinformatics 2006;7():109-109.</p><p>Published online 6 Mar 2006</p><p>PMCID:PMC1413562.</p><p>Copyright © 2006 Junker et al; licensee BioMed Central Ltd.</p>ost anthesis and analyzed for the dynamical changes of several central metabolites. The data set was mapped onto a network that was previously created in VANTED. Each node represents a metabolite, connected by solid and dashed lines that represent single and lumped enzyme reactions, respectively. Data are means of two independent plants, the standard error of the mean (SEM) is shown as a polygon around the line. A self-organizing map algorithm was performed to cluster the metabolites into three groups by similar behavior over time, which is visualized by the background color

VANTED: A system for advanced data analysis and visualization in the context of biological networks-2

<p><b>Copyright information:</b></p><p>Taken from "VANTED: A system for advanced data analysis and visualization in the context of biological networks"</p><p>BMC Bioinformatics 2006;7():109-109.</p><p>Published online 6 Mar 2006</p><p>PMCID:PMC1413562.</p><p>Copyright © 2006 Junker et al; licensee BioMed Central Ltd.</p> wildtype potato () tubers, and tubers expressing a yeast invertase either in an inducible or constitutive manner [33] was mapped onto the network. Each node represents a metabolite, connected by solid and dashed lines that represent single and lumped enzyme reactions, respectively. Data are means +/- standard error of the mean (SEM) of six independent plants. Values significantly different from the wildtype control as determined by an unpaired -test (< 005) were automatically marked with an asterisk. The bars in each diagram from left to right represent the values for the wildtype control (red), six inducible invertase lines, and one constitutive invertase line (light pink). The picture was created in VANTED and saved as a PNG file

Detailed information of a publication title.

<p>After clicking on a thumbnail, the user can open a dialog with information on the technique title, corresponding types and properties of data, supported visualization and analysis tasks, corresponding publication, and a BiBTex file with bibliographical information. DOI-based publication URLs, implementation URLs, and PubMed IDs are also displayed if available. By clicking the title of a similar technique, the corresponding technique is displayed directly in the same dialog box.</p

VSP-ADV sitting posture charts: Time lines.

<p>A high-resolution image of all postures with a duration <i>d</i> > 10 <i>sec</i>. ordered by starting time. Working day-specific sitting posture patterns can be evaluated. See Fig 10 for posture X labels.</p

VSP-ADV sitting health posture charts: Time lines.

<p>A high-resolution image of all postures with a duration <i>d</i> > 10 <i>sec</i>. ordered by starting time. The duration-related rating is shown here. See <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0195670#pone.0195670.g008" target="_blank">Fig 8</a> for time X labels.</p

VSP-ADV feature ratings.

<p>Ratings of the different features part of VSP-ADV.</p

Individual comparison of a technique with similar ones.

<p>The selected technique thumbnail in the middle is highlighted with a yellow halo, and the connections to 29 similar techniques are shown. The small box below each thumbnail contains the actual similarity value. For instance, the thumbnail with value 0.72 is the most similar technique compared to the selected item.</p