Molecular Assessment of Three Reproducing Populations of the Clubshell Mussel (Pleurobema clava) Reveals Historic Hybridization with Pleurobema Sintoxia

The clubshell (Pleurobema clava) is a federally endangered species of freshwater mussel endemic to Ohio that is currently found in fewer than ten river systems in the United States (\u3e85% range reduction). Two of the USFWS’s (1993) recovery goals are to establish ten viable populations and maintain any existing genetic viability. In order to recover the clubshell, conservation efforts including translocation and captive propagation have been used to augment existing populations. In order to maintain the genetic diversity and population level specificity, a molecular assessment is needed. In this study, we generated nuclear microsatellite data and mitochondrial (mtDNA) sequence data from three populations of clubshell to assess population structure.https://fuse.franklin.edu/forum-2013/1020/thumbnail.jp

Mitochondrial DNA Suggests Stonerollers (Campostoma anomalum) From Upper Shavers Fork Have Strong Genetic Similarities With The Recently Identified New River Form

A recent analysis of cytochrome b sequence data suggested the presence of two distinct lineages of stoneroller (Campostoma anomalum) in West Virginia: one form that occurs throughout most waters of the Ohio and Potomac River basins, and a second that is restricted to the New River basin. In Michael Sovic and Dr. Kody Kuehnl\u27s study, cytochrome b data are presented for individuals sampled from the upper reaches of Shavers Fork, a tributary of the Cheat River that is geographically proximate to, but not within the New River drainage. Haplotypes observed in the individuals from Shavers Fork are most similar to those from the New River. This result is consistent with the hypothesis of a historical connection between Shavers Fork and waters of the New River basin. In addition, if the two forms are formally recognized taxonomically, these data suggest that the range of the New River form may extend into Shavers Fork, and highlight the need for additional sampling in nearby drainages to better understand the full extent of the distribution of this unique stoneroller lineage in West Virginia.https://fuse.franklin.edu/forum-2013/1023/thumbnail.jp

The Invaluable Nature of Speech Evaluation Training for New Basic Course Instructors

Recent reforms in higher education recognize the centrality of communication in general education programs (e.g., Association of American Colleges and Universities, American Association of State Colleges and Universities, LEAP, Common Core State Standards). As oral communication knowledge and skills are becoming recognized as integral to general education programs across the country, many basic course directors are finding themselves in the position of offering multiple sections of the course taught by multiple instructors. Additionally, basic course directors find themselves with the responsibility of providing clear measures of what they do and how well they do it. Because oral communication assessment is key to remaining integral to general education (Allen, 2002), basic course directors must provide instructor training on how to fairly and consistently evaluate student performances. But before this training can take place, basic course directors need to have an evaluation system in place that is fair, consistent, and reflective of actual student performance. There are several challenges to speech evaluation that warrant such a process. This essay will address those challenges and propose a systematic evaluation process that can serve as an impetus to instructor training in this area

Effects of 17β-Estradiol Exposure on Gamete Development and Viability in Freshwater Unionids

Evidence of a functional role for vertebrate steroids has been demonstrated in a number of invertebrate species, including molluscs. This knowledge has generated interest into the possibility of invertebrate endocrine disruption due to exposure to both exogenous steroid hormones and xenobiotics which can mimic the action of these compounds. Exposure to the natural vertebrate estrogen, 17β-estradiol (E2), for example, has been shown to induce accelerated gamete development in multiple mollusc species. Little information exists, however, for freshwater mussels, a group of exceptional conservation interest. Here, Daniel Sovic, Raoman Lanno, Dr. Kody Kuehnl, and G. Thomas Watters report the findings of two field studies on gametogenesis (Elliptio complanata, Pleurobema clava) as they relate to seasonal estrogenicity of extracts from Polar Organic Compound Integrative Samplers (POCIS) as determined using the Yeast Estrogen Screen (YES) assay. In order to investigate effects of E2 exposure on gamete maturation and viability in freshwater mussels, Elliptio insulsa were dosed at one of three exposure levels. Effects on ova and sperm development were determined on biopsies collected 10 days and 6 months post-exposure and biopsy-generated data were compared with histological sections of vicera collected immediately following final biopsy collection. Comparisons of data collected via biopsy and traditional histological techniques provided data to evaluate the potential for utilizing non-lethal biopsy sampling to assess Unionid gametogenesis.https://fuse.franklin.edu/forum-2013/1022/thumbnail.jp

Dynamic energy system modeling using hybrid physics-based and machine learning encoder–decoder models

Three model configurations are presented for multi-step time series predictions of the heat absorbed by the water and steam in a thermal power plant. The models predict over horizons of 2, 4, and 6 steps into the future, where each step is a 5-minute increment. The evaluated models are a pure machine learning model, a novel hybrid machine learning and physics-based model, and the hybrid model with an incomplete dataset. The hybrid model deconstructs the machine learning into individual boiler heat absorption units: economizer, water wall, superheater, and reheater. Each configuration uses a gated recurrent unit (GRU) or a GRU-based encoder–decoder as the deep learning architecture. Mean squared error is used to evaluate the models compared to target values. The encoder–decoder architecture is over 11% more accurate than the GRU only models. The hybrid model with the incomplete dataset highlights the importance of the manipulated variables to the system. The hybrid model, compared to the pure machine learning model, is over 10% more accurate on average over 20 iterations of each model. Automatic differentiation is applied to the hybrid model to perform a local sensitivity analysis to identify the most impactful of the 72 manipulated variables on the heat absorbed in the boiler. The models and sensitivity analyses are used in a discussion about optimizing the thermal power plant

Freshwater Mussels as Biological Indicators

Viral hemorrhagic septicemia virus (VHSV) is a devastating rhabdovirus affecting freshwater fishes worldwide. In 2005, a new genotype of VHSV (IVb) was discovered in Lake St. Clair and has consequently spread throughout the Laurentian Great Lakes. While it is widely known that freshwater fishes are hosts and transmitters of VHSV, little is known about the ability of invertebrates to take up and carry the virus. Our (Vera Kazaniwskyj, Y. Zhang, G. Thomas Watters, Dr. Kody Kuehnl, and Barbara Wolfe) objective in this study was to investigate the ability of freshwater mussels to accumulate and transmit VHSV by using two commonly occurring freshwater mussel species (Corbicula fluminea and Amblema plicata) and to assess the efficacy of freshwater mussels as bioindicators of viral presence. Experiments used inoculations of 100 and 200 Tissue Culture Infective Dose units of VHSV. Mussel tissues were tested for VHS at 72h, 120h, and 168h post-exposure using rt-PCR. Initial results indicate that freshwater mussels have the ability to harbor the VHS virus, especially when inoculated with high doses, and thus can serve as valuable indicators of viral presence. These results also indicate mussels are not likely to maintain VHS long term within their tissues, and are therefore not likely vectors of the disease.https://fuse.franklin.edu/forum-2013/1021/thumbnail.jp

Clostridium difficile Infection and Proton Pump Inhibitor Use in Hospitalized Pediatric Cystic Fibrosis Patients

Children with cystic fibrosis (CF) often take proton pump inhibitors (PPIs), which helps improve efficacy of fat absorption with pancreatic enzyme replacement therapy. However, PPI use is known to be associated with Clostridium difficile-(C. diff-) associated diarrhea (CDAD). We retrospectively evaluated the incidence of C. diff infection from all pediatric hospital admissions over a 5-year period at a single tertiary children's hospital. We found significantly more C. diff-positive stool tests in hospitalized patients with CF compared to patients with no diagnosis of CF. However, use of a PPI was not associated with an increased risk of CDAD in hospitalized CF patients. In summary, C. diff infection is more common in hospitalized pediatric CF patients although PPI use may not be a risk factor for CDAD development in this patient population

The Impact of Vitamin A Deficiency on Tuberculosis Progression

BACKGROUND: Although previous studies have shown that vitamin A deficiency is associated with incident tuberculosis (TB) disease, the direction of the association has not been established. We investigated the impact of vitamin A deficiency on TB disease progression. METHODS: We conducted a longitudinal cohort study nested within a randomized clinical trial among HIV-infected patients in Haiti. We compared serial vitamin A levels in individuals who developed TB disease to controls matched on age, gender, follow-up time, and time to antiretroviral therapy initiation. We also evaluated histopathology, bacterial load, and immune outcomes in TB infection in a guinea pig model of dietary vitamin A deficiency. RESULTS: Among 773 participants, 96 developed incident TB during follow-up, 62.5% (60) of whom had stored serum samples obtained 90-365 days before TB diagnosis. In age- and sex- adjusted and multivariate analyses, respectively, incident TB cases were 3.99 times (95% confidence interval [CI], 2.41 to 6.60) and 3.59 times (95% CI, 2.05 to 6.29) more likely to have been vitamin A deficient than matched controls. Vitamin A-deficient guinea pigs manifested more extensive pulmonary pathology, atypical granuloma morphology, and increased bacterial growth after experimental TB infection. Reintroduction of dietary vitamin A to deficient guinea pigs after established TB disease successfully abrogated severe disease manifestations and altered cellular immune profiles. CONCLUSIONS: Human and animal studies support the role of baseline vitamin A deficiency as a determinant of future TB disease progression

FilmArray, an Automated Nested Multiplex PCR System for Multi-Pathogen Detection: Development and Application to Respiratory Tract Infection

The ideal clinical diagnostic system should deliver rapid, sensitive, specific and reproducible results while minimizing the requirements for specialized laboratory facilities and skilled technicians. We describe an integrated diagnostic platform, the “FilmArray”, which fully automates the detection and identification of multiple organisms from a single sample in about one hour. An unprocessed biologic/clinical sample is subjected to nucleic acid purification, reverse transcription, a high-order nested multiplex polymerase chain reaction and amplicon melt curve analysis. Biochemical reactions are enclosed in a disposable pouch, minimizing the PCR contamination risk. FilmArray has the potential to detect greater than 100 different nucleic acid targets at one time. These features make the system well-suited for molecular detection of infectious agents. Validation of the FilmArray technology was achieved through development of a panel of assays capable of identifying 21 common viral and bacterial respiratory pathogens. Initial testing of the system using both cultured organisms and clinical nasal aspirates obtained from children demonstrated an analytical and clinical sensitivity and specificity comparable to existing diagnostic platforms. We demonstrate that automated identification of pathogens from their corresponding target amplicon(s) can be accomplished by analysis of the DNA melting curve of the amplicon