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12 research outputs found
Statistical evaluation of methods for identification of differentially abundant genes in comparative metagenomics
Author
A Schwartzman
A Sjögren
+58Â more
B Beszteri
B Rodriguez-Brito
C Soneson
CW Law
DH Haft
DH Parks
DH Parks
DJ McCarthy
E Dugat-Bony
E Kristiansson
EL Lehmann
EM Ross
Erik Kristiansson
F Boulund
F Meyer
FH Karlsson
FH Karlsson
FJ Anscombe
G Casella
GK Smyth
I Nookaew
J Alneberg
J Handelsman
J Qin
J Qin
JA Frank
JC Wooley
JC Wooley
JD Storey
JN Paulson
JP Brooks
JR White
K Sanli
M Chafee
MB Sohn
MD Robinson
MD Robinson
MD Robinson
MI Love
MR Rondon
N Segata
Olle Nerman
P McCullagh
PD Schloss
PJ McMurdie
R Knight
R Liu
S Anders
SR Eddy
ST Kelley
T Fawcett
T Yatsunenko
TO Delmont
Tobias Ă–sterlund
Viktor Jonsson
VM Markowitz
WJ Kent
Y Benjamini
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
Full text link
Crossref
Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets
Author
A Zhu
C Huttenhower
+54Â more
C Pal
C Rutgersson
C Velasco
C-F Flach
Carl-Fredrik Flach
DG Joakim Larsson
DGJ Larsson
E Kristiansson
Erik Kristiansson
F Boulund
F Krueger
F Sievers
Fanny Berglund
Fredrik Boulund
G Cochrane
G Jacoby
GA Jacoby
HK Allen
I Vaz-Moreira
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Fick
J Huerta-Cepas
J Nesme
J Penders
J Qin
J Qin
J Strahilevitz
JA Gilbert
JA Perry
Johan Bengtsson-Palme
JR Miller
K Forslund
L MartĂnez-MartĂnez
L Poirel
LM Cavaco
LS Redgrave
M Arumugam
M Strous
MB Sánchez
MM Wang
MW Vetting
Nachiket P. Marathe
NJ Loman
OU Mason
R Lutz
R Schmieder
R Xia
S Arsène
S Pesant
SG Tringe
SR Eddy
X Xiong
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
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Crossref
Comparison of normalization methods for the analysis of metagenomic gene abundance data
Author
AC Ericsson
BM Bolstad
+55Â more
DH Parks
E Kristiansson
E Kristiansson
Erik Kristiansson
F Boulund
F Boulund
F Meyer
FH Karlsson
H Choi
H-L Wang
J Bengtsson-Palme
J Huerta-Cepas
J Qin
JA Navas-Molina
JB Hughes
JC Marioni
JC Wooley
JD Storey
JH Bullard
JL Morgan
JN Paulson
JR Kultima
JR White
KD Hansen
M-A Dillies
Mariana Buongermino Pereira
MB Sohn
MD Robinson
MD Robinson
MI Love
Mikael Wallroth
O Koren
O Manor
PD Schloss
PJ McMurdie
PJ McMurdie
R Core Team
S Anders
S Hawinkel
S Mitra
S Powell
S Sunagawa
S Sunagawa
S Weiss
S-Y Chen
SEQC/MAQC-III Consortium
SR Eddy
T Yatsunenko
T Ă–sterlund
TJ Sharpton
V Jonsson
V Jonsson
Viktor Jonsson
Y Benjamini
Y Kim
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Estimating relative biomasses of organisms in microbiota using “phylopeptidomics”
Author
A Heintz-Buschart
B Brooks
+23Â more
B Buchfink
B Mesuere
EM Hartmann
F Boulund
FA Herbst
FD Ciccarelli
G Alves
G Clair
G Klein
G Talavera
JP Dworzanski
K Cheng
M Kleiner
NC VerBerkmoes
NC Verberkmoes
ND Padliya
P Jagtap
P Wilmes
R Karlsson
RC Edgar
STM Lee
T Muth
T Muth
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Sewage effluent from an Indian hospital harbors novel carbapenemases and integron-borne antibiotic resistance genes
Author
A Bankevich
A Khajuria
+64Â more
A Okazaki
AG McArthur
BG Hall
C-F Flach
D Hocquet
D Hyatt
D Li
D Mazel
D van Duin
EMH Wellington
F Berglund
F Berglund
F Boulund
F Cabanettes
Fredrik Boulund
GC Amos
H Zhang
HS Courtney
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Coelho
J Jutkina
JA Klappenbach
JF Turton
JL MartĂnez
JL Mellies
K Horan
KJ Forsberg
L Antunes
L Chen
L Dortet
L. White
LTQ Lien
M Gillings
M Kazi
M Lamba
M Razavi
M Watanabe
MB Pereira
MK Gibson
MM-P Hellen Gelband
MO Sommer
MR Gillings
N Palmqvist
NP Marathe
NP Marathe
P Mullany
R Laxminarayan
RA Weingarten
RC Edgar
RG Alderson
S Gandra
S Rodriguez-Mozaz
SD Kotsakis
SD Kotsakis
SF Stoddard
SM Hatosy
T Hackl
T Větrovský
T. Naas
V Diwan
WP Rowe
Y Yang
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Identification of 76 novel B1 metallo-β-lactamases through large-scale screening of genomic and metagenomic data
Author
A Bankevich
A Wilke
+67Â more
AM Queenan
AR Wattam
B Langmead
C Lascols
C Pal
C Rutgersson
C Smillie
CR Roy
D Yong
DA Benson
DD Gudeta
DJ Hong
DM Livermore
E Kristiansson
F Boulund
F Boulund
F Fallah
F Wichmann
G Garau
G von Heijne
GL Rosano
H Daiyasu
H Elsaied
HK Allen
HK Allen
Human Microbiome Project C
IF Moore
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Guglielmini
J Guglielmini
J Huerta-Cepas
J Qin
J Qin
JJ Donato
K Bush
K Clark
K Senda
K Vercammen
KJ Forsberg
KM Papp-Wallace
L Dortet
L Poirel
LJ Gonzalez
M Galleni
M Grynberg
M Vanhove
M Widmann
MA Larkin
NB Shoemaker
OU Mason
P Hugenholtz
P Nordmann
P Rice
P Skewes-Cox
R Edgar
R Lutz
RF Potter
RG Alderson
RL Finley
S Thieme
SH Hu
T Palzkill
W Fast
W Yang
X Huang
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Evaluation of antibiotic resistance dissemination by wastewater treatment plant effluents with different catchment areas in Germany
Author
A Di Cesare
A Nocker
+32Â more
A Voigt
AH Holmes
D Cacace
DL Paterson
E Frahm
F Baquero
F Boulund
G Humphreys
G Klein
GK Paulus
H MĂĽller
H Volkmann
H-Y Liu
J Alexander
J Bengtsson-Palme
J Bruchmann
J Davies
J Monteiro
KJ Forsberg
M Bonyadian
N Hembach
N Hembach
N Peak
PM Kurpiel
RA Armstrong
RJ Clifford
S Cho
S Jechalke
SM Hatosy
T Jäger
TU Berendonk
X Zhang
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
HirBin: high-resolution identification of differentially abundant functions in metagenomes
Author
A Oulas
A Subramanian
+47Â more
AC Howe
AO Hudson
AR Quinlan
B Langmead
C Burke
D Lee
DH Haft
DH Huson
E Kristiansson
E Plummer
E Prestat
EM Glass
Erik Kristiansson
F Boulund
F Corpet
FH Karlsson
J Li
J Qin
J Qin
JA O’Rawe
JC Venter
JR Kultima
L Väremo
M Arumugam
ML Metzker
PK Mehta
R Apweiler
R Knight
RC Edgar
RD Finn
RL Tatusov
SA Sankar
SG Tringe
SR Eddy
SV Angiuoli
T Bose
T Prakash
T Thomas
T Yatsunenko
Tobias Ă–sterlund
TS Schmidt
V Jonsson
Viktor Jonsson
WJ Kent
X Mao
Y Benjamini
Y Kim
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
Identification and reconstruction of novel antibiotic resistance genes from metagenomes
Author
A Bankevich
A Wilke
+52Â more
AG McArthur
B Buchfink
B GrĂĽning
B Liu
BG Hall
C Camacho
C Pal
C Urbach
CL Ventola
Consortium HMP
D Hyatt
D Yong
DH Huson
E Ruppe
E Zankari
EC Pehrsson
F Berglund
F Boulund
G Arango-Argoty
G Garau
GA Jacoby
H Daiyasu
H Li
HK Allen
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Davies
J Qin
JMA Blair
KJ Forsberg
M Hunt
M Strous
MA Larkin
MJ Ellington
MK Gibson
MOA Sommer
MR Gillings
NP Marathe
OU Mason
P Hugenholtz
P Rice
R Edgar
RG Alderson
S Pesant
SK Gupta
SR Eddy
W Huang
WPM Rowe
X Yin
Y Yang
YW Wu
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
The diversity of uncharacterized antibiotic resistance genes can be predicted from known gene variants—but not always
Author
A Angers-Loustau
A Chao
+58Â more
A Chao
A Karkman
A Pruden
AC Martiny
AC Singer
C Pal
C Pal
C Shannon
CS Riesenfeld
D Li
DGJ Larsson
E Zankari
EC Pehrsson
EC Pehrsson
EH Simpson
F Boulund
F Wichmann
HK Allen
HK Allen
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Bengtsson-Palme
J Handelsman
J Nesme
JA Port
JL Martinez
KJ Forsberg
KM McGarvey
L Tedersoo
M Delgado-Baquerizo
M Razavi
MOA Sommer
MR Gillings
N Czekalski
NJ Ashbolt
NP Marathe
PMC Huijbers
R Aminov
R Core Team
RC Edgar
RL Finley
S Berkner
S Sunagawa
TA Gianoulis
TU Berendonk
VM D'Costa
WHO
WI Muziasari
Y Benjamini
Y Hu
Y-G Zhu
Publication venue
'Springer Science and Business Media LLC'
Publication date
Field of study
No full text
Crossref
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