Additional file 6: Figure S4. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Habitat suitability of O. glumaepatula during the Last Glacial Maximum (~21,000BP), compared with the distribution of genetic clusters and Shannon diversity index of sampled populations. (TIF 1751 kb

Additional file 8: Table S3. of Distribution, genetic diversity and potential spatiotemporal scale of alien gene flow in crop wild relatives of rice (Oryza spp.) in Colombia

Results of Mantel tests for all rice CWR between genetic and geographical distances for all individuals sampled and individuals per genetic cluster. (DOCX 14 kb

Complete linkage clustering based on Nei’s distance (cophenetic correlation = 0.92).

<p>Complete linkage clustering based on Nei’s distance (cophenetic correlation = 0.92).</p

Cluster richness, i.e. the number of different clusters shown in <b>figure 5</b> that occur in a given area.

<p>Cluster richness, i.e. the number of different clusters shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0047676#pone-0047676-g005" target="_blank"><b>figure 5</b></a> that occur in a given area.</p

Overview of the different locations of the ten clusters identified by k-means clustering.

<p>The three subclusters of cluster 6 are highlighted with different colours, clearly distinguishing the group that is largely composed of the Nacional cultivar of the Ecuadorean coastal plains (red colour).</p

Averages of genetic parameters per locus for clusters 1 to 10, based on 1,000 bootstrap samples of 35 trees (i.e. the size of the smallest cluster).

<p>Four highest values for each of the parameters are underlined.</p

Averages of genetic parameters per locus for trees from coastal Ecuador (Nacional cultivar) and the remaining trees from cluster 6 (Contamana + Nacional (+Purus)), based on 1,000 bootstrap samples of 20 trees (i.e. the number of trees from coastal Ecuador).

<p>Averages of genetic parameters per locus for trees from coastal Ecuador (Nacional cultivar) and the remaining trees from cluster 6 (Contamana + Nacional (+Purus)), based on 1,000 bootstrap samples of 20 trees (i.e. the number of trees from coastal Ecuador).</p

Species richness of genus <i>Theobroma</i>.

<p>Left: observed species richness in 10 minute grid cells and a circular neighborhood of 1 decimal degree; Right: modeled species richness in 2.5 minute grid cells.</p

Observed locally common alleles compared to past and current modeled distribution of cacao.

<p>Upper: distribution of areas with modeled habitat suitability of cacao during the LGM; red dashed polygons show potential relatively isolated refugia associated with areas holding high levels of locally common alleles. Lower: changes in cacao habitat suitability from the LGM until present; red areas represent potential habitat suitability during LGM but no longer at present (high impact or restriction areas); green indicates areas with continued habitat suitability from LGM until present (low impact or stable areas); and blue indicates areas that were probably not suitable for cacao at the LGM, but are suitable at present (new or expansion areas).</p

Conflicts reported to be experienced by people as a function of the number of co-management conditions perceived to be fulfilled (GLM with binomial distribution and logit link function; N = 584; z = -5.68; <i>P</i> = 1.3e-8).

<p>A condition was considered fulfilled if at least one of its sub-conditions was met (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0144943#pone.0144943.t001" target="_blank">Table 1</a> for list of sub-conditions). This model explains 11% of the null deviance.</p