Determination of Genetic Relatedness among Selected Rice Cultivars Using Microsatellite Markers for Cultivars Improvement through Marker Assisted Breeding

Rice is grown in diverse environmental conditions. In this study, genetic variation among thirteen Iranian and thirteen Malaysian rice cultivars was determined using Microsatellite markers. Microsatellites are polymerase chain reaction (PCR) based and dbla ceelcuoobeoy xoed (DNA) markers which are abundant, co-dominant and widely used in various organisms. This study consisted of two parts, the first part was DNA extraction, which consisted of comparing between four different DNA extraction methods, namely the Dellaporta and CTAB as conventional methods also, Promega and Axyprep as commercial protocols kits. Comparison was also made on the effect of different leaf age as well as leaf position on different quality and yield of DNA obtained. The results of the study showed significant difference (P<0.05) between different extraction methods in relation to optical density OD 260/280 nm and DNA yield from each method. The Dellaporta method (OD260/280=2±0.07nm and DNA yield 2073±196 ng) gave the best results. The positions of different leafs (from top to bottom leaf number 4 to 1) and the ages of leafs (2, 4, 6 and 8 weeks) were also monitored for optimum DNA extraction. The results of the Duncan test showed that there was no significant difference (P>0.05) between leaf positions for 2 to 4 weeks old leaf. However, the age of leaves in young and fresh stages of tissue showed significant difference (P<0.05) in ratio of OD260/280 2±0.03 and DNA yield (1373±70 ng). The results (based on method of extraction, leaf age and position) were used for subsequent DNA extraction of the 26 rice cultivars. The second part consisted of molecular work using twenty one microsatellite primer pairs which were selected from the Gene Bank. The estimation of genetic diversity among two rice groups (Iranian and Malaysian cultivars) were done with the assistance of two softwares UVIdoc (ver.98) and POPGENE (ver.1.31). A total of 21 loci (75 alleles) were observed, of which 20 loci (95.24 %) were polymorphic, except RM338. Microsatellite loci RM1 and RM271 showed the highest polymorphism (between 94 to 136 bp in size). The Polymorphism Information Content (PIC) value was (0.578±0.170). The dendogram constructed based on genetic distance values (UPGMA) grouped the cultivars into five clusters. All of the Iranian rice cultivars were placed in cluster I and III while Malaysian rice cultivars were in clusters IV and V. However cluster II consisted of both Iranian and Malaysian rice cultivars. The results of genetic diversity among selected cultivars in this study can be used for screening of the high grain quality rice accession for backcrossing and breeding programs

Exploring the Boundaries of Semi-Supervised Facial Expression Recognition: Learning from In-Distribution, Out-of-Distribution, and Unconstrained Data

Deep learning-based methods have been the key driving force behind much of the recent success of facial expression recognition (FER) systems. However, the need for large amounts of labelled data remains a challenge. Semi-supervised learning offers a way to overcome this limitation, allowing models to learn from a small amount of labelled data along with a large unlabelled dataset. While semi-supervised learning has shown promise in FER, most current methods from general computer vision literature have not been explored in the context of FER. In this work, we present a comprehensive study on 11 of the most recent semi-supervised methods, in the context of FER, namely Pi-model, Pseudo-label, Mean Teacher, VAT, UDA, MixMatch, ReMixMatch, FlexMatch, CoMatch, and CCSSL. Our investigation covers semi-supervised learning from in-distribution, out-of-distribution, unconstrained, and very small unlabelled data. Our evaluation includes five FER datasets plus one large face dataset for unconstrained learning. Our results demonstrate that FixMatch consistently achieves better performance on in-distribution unlabelled data, while ReMixMatch stands out among all methods for out-of-distribution, unconstrained, and scarce unlabelled data scenarios. Another significant observation is that semi-supervised learning produces a reasonable improvement over supervised learning, regardless of whether in-distribution, out-of-distribution, or unconstrained data is utilized as the unlabelled set. We also conduct sensitivity analyses on critical hyper-parameters for the two best methods of each setting

Contrastive Learning of View-Invariant Representations for Facial Expressions Recognition

Although there has been much progress in the area of facial expression recognition (FER), most existing methods suffer when presented with images that have been captured from viewing angles that are non-frontal and substantially different from those used in the training process. In this paper, we propose ViewFX, a novel view-invariant FER framework based on contrastive learning, capable of accurately classifying facial expressions regardless of the input viewing angles during inference. ViewFX learns view-invariant features of expression using a proposed self-supervised contrastive loss which brings together different views of the same subject with a particular expression in the embedding space. We also introduce a supervised contrastive loss to push the learnt view-invariant features of each expression away from other expressions. Since facial expressions are often distinguished with very subtle differences in the learned feature space, we incorporate the Barlow twins loss to reduce the redundancy and correlations of the representations in the learned representations. The proposed method is a substantial extension of our previously proposed CL-MEx, which only had a self-supervised loss. We test the proposed framework on two public multi-view facial expression recognition datasets, KDEF and DDCF. The experiments demonstrate that our approach outperforms previous works in the area and sets a new state-of-the-art for both datasets while showing considerably less sensitivity to challenging angles and the number of output labels used for training. We also perform detailed sensitivity and ablation experiments to evaluate the impact of different components of our model as well as its sensitivity to different parameters.Comment: Accepted in ACM Transactions on Multimedia Computing, Communications, and Application

Speech Emotion Recognition with Distilled Prosodic and Linguistic Affect Representations

We propose EmoDistill, a novel speech emotion recognition (SER) framework that leverages cross-modal knowledge distillation during training to learn strong linguistic and prosodic representations of emotion from speech. During inference, our method only uses a stream of speech signals to perform unimodal SER thus reducing computation overhead and avoiding run-time transcription and prosodic feature extraction errors. During training, our method distills information at both embedding and logit levels from a pair of pre-trained Prosodic and Linguistic teachers that are fine-tuned for SER. Experiments on the IEMOCAP benchmark demonstrate that our method outperforms other unimodal and multimodal techniques by a considerable margin, and achieves state-of-the-art performance of 77.49% unweighted accuracy and 78.91% weighted accuracy. Detailed ablation studies demonstrate the impact of each component of our method.Comment: Under revie

Exploring the Landscape of Ubiquitous In-home Health Monitoring: A Comprehensive Survey

Ubiquitous in-home health monitoring systems have become popular in recent years due to the rise of digital health technologies and the growing demand for remote health monitoring. These systems enable individuals to increase their independence by allowing them to monitor their health from the home and by allowing more control over their well-being. In this study, we perform a comprehensive survey on this topic by reviewing a large number of literature in the area. We investigate these systems from various aspects, namely sensing technologies, communication technologies, intelligent and computing systems, and application areas. Specifically, we provide an overview of in-home health monitoring systems and identify their main components. We then present each component and discuss its role within in-home health monitoring systems. In addition, we provide an overview of the practical use of ubiquitous technologies in the home for health monitoring. Finally, we identify the main challenges and limitations based on the existing literature and provide eight recommendations for potential future research directions toward the development of in-home health monitoring systems. We conclude that despite extensive research on various components needed for the development of effective in-home health monitoring systems, the development of effective in-home health monitoring systems still requires further investigation.Comment: 35 pages, 5 figure

Human Pose Estimation from Ambiguous Pressure Recordings with Spatio-temporal Masked Transformers

Despite the impressive performance of vision-based pose estimators, they generally fail to perform well under adverse vision conditions and often don't satisfy the privacy demands of customers. As a result, researchers have begun to study tactile sensing systems as an alternative. However, these systems suffer from noisy and ambiguous recordings. To tackle this problem, we propose a novel solution for pose estimation from ambiguous pressure data. Our method comprises a spatio-temporal vision transformer with an encoder-decoder architecture. Detailed experiments on two popular public datasets reveal that our model outperforms existing solutions in the area. Moreover, we observe that increasing the number of temporal crops in the early stages of the network positively impacts the performance while pre-training the network in a self-supervised setting using a masked auto-encoder approach also further improves the results

Self-supervised Learning for ECG-based Emotion Recognition

We present an electrocardiogram (ECG) -based emotion recognition system using self-supervised learning. Our proposed architecture consists of two main networks, a signal transformation recognition network and an emotion recognition network. First, unlabelled data are used to successfully train the former network to detect specific pre-determined signal transformations in the self-supervised learning step. Next, the weights of the convolutional layers of this network are transferred to the emotion recognition network, and two dense layers are trained in order to classify arousal and valence scores. We show that our self-supervised approach helps the model learn the ECG feature manifold required for emotion recognition, performing equal or better than the fully-supervised version of the model. Our proposed method outperforms the state-of-the-art in ECG-based emotion recognition with two publicly available datasets, SWELL and AMIGOS. Further analysis highlights the advantage of our self-supervised approach in requiring significantly less data to achieve acceptable results.Comment: Accepted, 45th IEEE International Conference on Acoustics, Speech, and Signal Processin

RFNet: Riemannian Fusion Network for EEG-based Brain-Computer Interfaces

This paper presents the novel Riemannian Fusion Network (RFNet), a deep neural architecture for learning spatial and temporal information from Electroencephalogram (EEG) for a number of different EEG-based Brain Computer Interface (BCI) tasks and applications. The spatial information relies on Spatial Covariance Matrices (SCM) of multi-channel EEG, whose space form a Riemannian Manifold due to the Symmetric and Positive Definite structure. We exploit a Riemannian approach to map spatial information onto feature vectors in Euclidean space. The temporal information characterized by features based on differential entropy and logarithm power spectrum density is extracted from different windows through time. Our network then learns the temporal information by employing a deep long short-term memory network with a soft attention mechanism. The output of the attention mechanism is used as the temporal feature vector. To effectively fuse spatial and temporal information, we use an effective fusion strategy, which learns attention weights applied to embedding-specific features for decision making. We evaluate our proposed framework on four public datasets from three popular fields of BCI, notably emotion recognition, vigilance estimation, and motor imagery classification, containing various types of tasks such as binary classification, multi-class classification, and regression. RFNet approaches the state-of-the-art on one dataset (SEED) and outperforms other methods on the other three datasets (SEED-VIG, BCI-IV 2A, and BCI-IV 2B), setting new state-of-the-art values and showing the robustness of our framework in EEG representation learning

Consistency-guided Prompt Learning for Vision-Language Models

We propose Consistency-guided Prompt learning (CoPrompt), a new fine-tuning method for vision-language models that addresses the challenge of improving the generalization capability of large foundation models while fine-tuning them on downstream tasks in a few-shot setting. The basic idea of CoPrompt is to enforce a consistency constraint in the prediction of the trainable and pre-trained models to prevent overfitting on the downstream task. Additionally, we introduce the following two components into our consistency constraint to further boost the performance: enforcing consistency on two perturbed inputs and combining two dominant paradigms of tuning, prompting and adapter. Enforcing consistency on perturbed input further regularizes the consistency constraint, effectively improving generalization, while tuning additional parameters with prompting and adapters improves the performance on downstream tasks. Extensive experiments show that CoPrompt outperforms existing methods on a range of evaluation suites, including base-to-novel generalization, domain generalization, and cross-dataset evaluation tasks. On the generalization task, CoPrompt improves the state-of-the-art by 2.09% on the zero-shot task and 1.93% on the harmonic mean over 11 recognition datasets. Detailed ablation studies show the effectiveness of each of the components in CoPrompt