Summer phytoplankton assemblages and their environmental correlates in the Southern California Bight

Weekly observations of chemical and physical variables, and of phytoplankton abundances, were made over a 21-week period at three stations in the Southern California Bight. Principal component analysis was employed to resolve four phytoplankton assemblages among the 25 taxa with the highest variances for their log transformed abundances. Two of these components were described by the abundance of taxa characteristic of upwelling assemblages—both dominated by diatoms. A third assemblage was dominated by the red tide dinoflagellate, Gonyaulax polyedra, along with some small diatoms and a coccolithophorid.Canonical correlation analysis of the four phytoplankton components against 13 environmental variables revealed distinct sets of temperature-salinity-nutrient conditions associated with periods of abundance of each assemblage. Two were interpretable, on physical grounds, as upwelling situations, and these were associated with periods of abundance of the phytoplankton assemblages that were identified, on floristic grounds, as upwelling assemblages. The red tide assemblage was associated with nonupwelling conditions.The pattern of correlations of 89 other taxa, besides the 25 employed in the principal component analysis, with the four principal components and the four environmental canonical variates were also consistent with this interpretation. Comparison with phytoplankton assemblages described in other studies reveals substantial consistency in broad outline, but many differences in detail, especially with respect to the presence and absence of species.The species assemblages defined by the principal components analysis exhibited episodes of abundance of a duration of 2–3 weeks at a given location. Current meter records, from nearby stations, but from another year, suggest that a persistence time of 2–3 weeks at a stationary site corresponds to a spatial patch scale of 20–40 km. These same current meter records show approximately 50% coherence in low-frequency currents at a separation of 25 km, indicating a possible common scale for spatial coherence of currents and spatial extent of phytoplankton blooms in this system.Implications of the analysis are discussed in terms of hypotheses concerning the structure and dynamics of plankton communities

Microbial sources of exocellular DNA in the ocean

© The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Linney, M. D., Eppley, J. M., Romano, A. E., Luo, E., DeLong, E. F., & Karl, D. M. Microbial sources of exocellular DNA in the ocean. Applied and Environmental Microbiology, 88(7), (2022): e02093-21, https://doi.org/10.1128/aem.02093-21.Exocellular DNA is operationally defined as the fraction of the total DNA pool that passes through a membrane filter (0.1 μm). It is composed of DNA-containing vesicles, viruses, and free DNA and is ubiquitous in all aquatic systems, although the sources, sinks, and ecological consequences are largely unknown. Using a method that provides separation of these three fractions, we compared open ocean depth profiles of DNA associated with each fraction. Pelagibacter-like DNA dominated the vesicle fractions for all samples examined over a depth range of 75 to 500 m. Viral DNA consisted predominantly of myovirus-like and podovirus-like DNA and contained the highest proportion of unannotated sequences. Euphotic zone free DNA (75 to 125 m) contained primarily bacterial and viral sequences, with bacteria dominating samples from the mesopelagic zone (500 to 1,000 m). A high proportion of mesopelagic zone free DNA sequences appeared to originate from surface waters, including a large amount of DNA contributed by high-light Prochlorococcus ecotypes. Throughout the water column, but especially in the mesopelagic zone, the composition of free DNA sequences was not always reflective of cooccurring microbial communities that inhabit the same sampling depth. These results reveal the composition of free DNA in different regions of the water column (euphotic and mesopelagic zones), with implications for dissolved organic matter cycling and export (by way of sinking particles and/or migratory zooplankton) as a delivery mechanism.This work was supported by the Simons Collaboration on Ocean Processes and Ecology (awards 329108 to D.M.K. and E.F.D., 721252 to D.M.K., and 721223 to E.F.D.)

The Near-Linear Regime of Gravitational Waves in Numerical Relativity

We report on a systematic study of the dynamics of gravitational waves in full 3D numerical relativity. We find that there exists an interesting regime in the parameter space of the wave configurations: a near-linear regime in which the amplitude of the wave is low enough that one expects the geometric deviation from flat spacetime to be negligible, but nevertheless where nonlinearities can excite unstable modes of the Einstein evolution equations causing the metric functions to evolve out of control. The implications of this for numerical relativity are discussed.Comment: 10 pages, 2 postscript figures, revised tex

Sinking properties of some phytoplankton shapes and the relation of form resistance to morphological diversity of plankton – an experimental study

Form resistance (Phi) is a dimensionless number expressing how much slower or faster a particle of any form sinks in a fluid medium than the sphere of equivalent volume. Form resistance factors of PVC models of phytoplankton sinking in glycerin were measured in a large aquarium (0.6 x 0.6 x 0.95 m). For cylindrical forms, a positive relationship was found between Phi and length/ width ratio. Coiling decreased Phi in filamentous forms. Form resistance of Asterionella colonies increased from single cells up to 6-celled colonies than remained nearly constant. For Fragilaria crotonensis chains, no such upper limit to Phi was observed in chains of up to 20 cells ( longer ones were not measured). The effect of symmetry on Phi was tested in 1 - 6-celled Asterionella colonies, having variable angles between the cells, and in Tetrastrum staurogeniaeforme coenobia, having different spine arrangements. In all cases, symmetric forms had considerably higher form resistance than asymmetric ones. However, for Pediastrum coenobia with symmetric/asymmetric fenestration, no difference was observed with respect to symmetry. Increasing number and length of spines on Tetrastrum coenobia substantially increased Phi. For a series of Staurastrum forms, a significant positive correlation was found between arm-length/cell-width ratio and Phi: protuberances increased form resistance. Flagellates (Rhodomonas, Gymnodinium) had a Phi 1. The highest value ( Phi = 8.1) was established for a 20-celled Fragilaria crotonensis chain. Possible origin of the so-called 'vital component' ( a factor that shows how much slower viable populations sink than morphologically similar senescent or dead ones) is discussed, as is the role of form resistance in evolution of high diversity of plankton morphologies

Deep subcutaneous application of poly-L-lactic acid as a filler for facial lipoatrophy in HIV-infected patients

Introduction: Facial lipoatrophy is a crucial problem of HIV-infected patients undergoing highly active antiretroviral therapy (HAART). Poly-L-lactic acid (PLA), provided as New-Fill(R)/Sculptra(TM), is known as one possible treatment option. In 2004 PLA was approved by the FDA as Sculptra(TM) for the treatment of lipoatrophy of the face in HIV-infected patients. While the first trials demonstrated relevant efficacy, this was to some extent linked to unwanted effects. As the depth of injection was considered relevant in this context, the application modalities of the preparation were changed. The preparation was to be injected more deeply into subcutaneous tissue, after increased dilution. Material and Methods: To test this approach we performed a pilot study following the new recommendations in 14 patients. Results: While the efficacy turned out to be about the same, tolerability was markedly improved. The increase in facial dermal thickness was particularly obvious in those patients who had suffered from lipoatrophy for a comparatively small period of time. Conclusion: With the new recommendations to dilute PLA powder and to inject it into the deeper subcutaneous tissue nodule formation is a minor problem. However, good treatment results can only be achieved if lipoatrophy is not too intense; treatment intervals should be about 2 - 3 weeks. Copyright (C) 2005 S. Karger AG, Basel

Three-dimensional adaptive evolution of gravitational waves in numerical relativity

Adaptive techniques are crucial for successful numerical modeling of gravitational waves from astrophysical sources such as coalescing compact binaries, since the radiation typically has wavelengths much larger than the scale of the sources. We have carried out an important step toward this goal, the evolution of weak gravitational waves using adaptive mesh refinement in the Einstein equations. The 2-level adaptive simulation is compared with unigrid runs at coarse and fine resolution, and is shown to track closely the features of the fine grid run.Comment: REVTeX, 7 pages, including three figures; submitted to Physical Review

Dynamics of Gravitational Waves in 3D: Formulations, Methods, and Tests

The dynamics of gravitational waves is investigated in full 3+1 dimensional numerical relativity, emphasizing the difficulties that one might encounter in numerical evolutions, particularly those arising from non-linearities and gauge degrees of freedom. Using gravitational waves with amplitudes low enough that one has a good understanding of the physics involved, but large enough to enable non-linear effects to emerge, we study the coupling between numerical errors, coordinate effects, and the nonlinearities of the theory. We discuss the various strategies used in identifying specific features of the evolution. We show the importance of the flexibility of being able to use different numerical schemes, different slicing conditions, different formulations of the Einstein equations (standard ADM vs. first order hyperbolic), and different sets of equations (linearized vs. full Einstein equations). A non-linear scalar field equation is presented which captures some properties of the full Einstein equations, and has been useful in our understanding of the coupling between finite differencing errors and non-linearites. We present a set of monitoring devices which have been crucial in our studying of the waves, including Riemann invariants, pseudo-energy momentum tensor, hamiltonian constraint violation, and fourier spectrum analysis.Comment: 34 pages, 14 figure