Two competing mechanisms for the copper-free Sonogashira cross-coupling reaction

The mechanism of the copper-free Sonogashira cross-coupling was investigated using a model reaction with differently para-substituted phenylacetylenes and 4-iodobenzotrifluoride as coupling partners and a Pd 2 (dba) 3 -CHCl 3 -AsPh 3 catalyst system in methanol. A carbopalladation mechanism was ruled out through a series of experiments in which the equivalent of a carbopalladation reaction intermediate was synthesized by an alternate route, and its conversion to product was monitored. A Hammett correlation study revealed a possible mechanistic changeover when going from electron-rich to electron-poor alkynes in the model reaction. It is advocated that the reaction mechanism changes from a pathway involving a fast proton transfer from a slowly forming cationic Pd complex to a pathway involving a slow proton transfer from a neutral Pd complex on going from electron-rich to electron-poor alkynes. The amine base is believed to act as a base in both pathways and as a nucleophile promoting the formation of the cationic complex in the reactions involving electron-rich alkynes. This was substantiated by the observation of a primary isotope effect (K Alkyne-H /K Aikyne-D ≈ 2) for the electron-poor alkyne and a pronounced base dependence for the electron-rich one. \ua9 2008 American Chemical Society

The Influence of pH on the Specific Adhesion of P Piliated Escherichia coli

Adhesion to host tissues is an initiating step in a majority of bacterial infections. In the case of Gram-negative bacteria this adhesion is often mediated by a specific interaction between an adhesin, positioned at the distal end of bacterial pili, and its receptor on the surface of the host tissue. Furthermore, the rod of the pilus, and particularly its biomechanical properties, is believed to be crucial for the ability of bacteria to withstand external forces caused by, for example, (in the case of urinary tract infections) urinary rinsing flows by redistributing the force to several pili. In this work, the adhesion properties of P-piliated E. coli and their dependence of pH have been investigated in a broad pH range by both the surface plasmon resonance technique and force measuring optical tweezers. We demonstrate that P piliated bacteria have an adhesion ability throughout the entire physiologically relevant pH range (pH 4.5 - 8). We also show that pH has a higher impact on the binding rate than on the binding stability or the biomechanical properties of pili; the binding rate was found to have a maximum around pH 5 while the binding stability was found to have a broader distribution over pH and be significant over the entire physiologically relevant pH range. Force measurements on a single organelle level show that the biomechanical properties of P pili are not significantly affected by pH