19 research outputs found
Additional file 6: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Species-specific superfamily trees reconstructed by maximum likelihood. The number on branches denote the aLRT branch support. (PDF 4864 kb
Additional file 3: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Summary of superfamilies abundance per wasp species analyzed. (DOCX 13 kb
Additional file 7: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Final TE contigs after redundancy removal with cd-hit-est characterized in this study. (FASTA 7362 kb
Additional file 10: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Amino acid distance between TEs proteins used in the phylogenetic reconstruction. (XLSX 914 kb
Additional file 2: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Features of TE contigs recovered by different approaches. (DOCX 8 kb
Additional file 8: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Helitron phylogenetic tree with complete coding regions of RepBase elements. (PDF 59 kb
Additional file 1: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Workflow of softwares used in this study. A) pipelines and softwares used to complementary characterize the mobilome of both wasp species and derivate a final TE dataset. B) Evolutionary analysis performed only with RepeatExplorer contigs per superfamily. (PDF 31 kb
Additional file 4: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Contigs description and TE conserved domains found. (XLSX 38 kb
Additional file 9: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Copia superfamily tree reconstructed by maximum likelihood. Numbers on branches denote the aLRT branch support. (PDF 641 kb
Additional file 5: of Drosophila parasitoid wasps bears a distinct DNA transposon profile
Protein length before and after manual alignment edition. (XLSX 46 kb