Senescence in Organisms with Clonal Reproduction and Complex Life Histories

A population genetics model is developed predicting the fate of alleles affecting life-history attributes in organisms with complex life histories, including clonal reproduction and indeterminate growth. Such organisms are widespread and found in many ecologically important groups, including marine invertebrates such as corals and sponges, and most higher plant taxa. The evolution of senescence (here defined as a decrease in fitness components with age or stage) by the action of alleles having negatively pleiotropic stage effects is investigated in such organisms. The spread of these alleles depends on the sensitivity of the population growth rate, a measure of fitness, to changes in life-history parameters that for this model are the entries of the stage transition matrix. Examples from a published demographic study show that, for several cases examined, alleles increasing early survival or early reproduction at the cost of decreased late survival will not be favored. Clonal reproduction acts to retard the evolution of senescence, although by itself the existence of clonal reproduction in an organism does not preclude the evolution of senescence

Sex and Asex: A clonal lexicon

This is a pre-copyedited, author-produced version of an article accepted for publication in Journal of Heredity following peer review. The version of record--Maria E Orive, Stacy A Krueger-Hadfield, Sex and Asex: A clonal lexicon, Journal of Heredity, 2020;, esaa058, https://doi.org/10.1093/jhered/esaa058--is available online at: https://doi.org/10.1093/jhered/esaa058Organisms across the tree of life have complex life cycles that include both sexual and asexual reproduction or that are obligately asexual. These organisms include ecologically dominant species that structure many terrestrial and marine ecosystems, as well as many pathogens, pests, and invasive species. We must consider both the evolution and maintenance of these various reproductive modes and how these modes shape the genetic diversity, adaptive evolution, and ability to persist of the species that exhibit them. Thus, having a common framework is a key aspect of understanding the biodiversity that shapes our planet. In the 2019 AGA President’s Symposium, Sex and Asex: The genetics of complex life cycles, researchers investigating a wide range of taxonomic models and using a variety of modes of investigation coalesced around a common theme – understanding not only how such complex life cycles may evolve, but how they are shaped by the evolutionary and ecological forces around them. In this introduction to the Special Issue from the symposium, we give an overview of some of the key ideas and areas of investigation (a common clonal lexicon, we might say) and introduce the breadth of work submitted by symposium participants

The role of pathogen shedding in linking within- and between-host pathogen dynamics

A model linking within- and between-host pathogen dynamics via pathogen shedding (emission of pathogens throughout the course of infection) is developed, and several aspects of host availability and co-infection are considered. In this model, the rate of pathogen shedding affects both the pathogen population size within a host (also affecting host mortality) and the rate of infection of new hosts. Our goal is to ascertain how the rate of shedding is likely to evolve, and what factors permit coexistence of alternative shedding rates in a pathogen population. For a constant host population size (where an increase in infected hosts necessarily decreases susceptible hosts), important differences arise depending on whether pathogens compete only for susceptible (uninfected) hosts, or whether co-infection allows for competition for infected hosts. With no co-infection, the pathogen type that can persist with the lowest number of susceptible hosts will outcompete any other, which under the assumptions of the model is the pathogen with the highest basic reproduction number. This is often a pathogen with a relatively high shedding rate (s). If within-host competition is allowed, a trade-off develops due to the conflicting effects of shedding on within- and between-host pathogen dynamics, with within-host competition favoring clones with low shedding rates while between-host competition benefits clones with higher shedding rates. With within-host competition for the same host cells, low shedding rate clones should eliminate high-s clones in a co-infected host, if equilibrium is reached. With co-infection, but no within-host competition, pathogen clones still interact by affecting the mortality of co-infected hosts; here, coexistence is more likely. With co-infection, two clones can coexist if one is the superior competitor for uninfected hosts and the other for co-infected hosts

Nonclonal coloniality: Genetically chimeric colonies through fusion of sexually produced polyps in the hydrozoan Ectopleura larynx

Hydrozoans typically develop colonies through asexual budding of polyps. Although colonies of Ectopleura are similar to other hydrozoans in that they consist of multiple polyps physically connected through continuous epithelia and shared gastrovascular cavity, Ectopleura larynx does not asexually bud polyps indeterminately. Instead, after an initial phase of limited budding in a young colony, E. larynx achieves its large colony size through the aggregation and fusion of sexually (nonclonally) produced polyps. The apparent chimerism within a physiologically integrated colony presents a potential source of conflict between distinct genetic lineages, which may vary in their ability to access the germline. To determine the extent to which the potential for genetic conflict exists, we characterized the types of genetic relationships between polyps within colonies, using a RAD‐Seq approach. Our results indicate that E. larynx colonies are indeed comprised of polyps that are clones and sexually reproduced siblings and offspring, consistent with their life history. In addition, we found that colonies also contain polyps that are genetically unrelated, and that estimates of genome‐wide relatedness suggests a potential for conflict within a colony. Taken together, our data suggest that there are distinct categories of relationships in colonies of E. larynx, likely achieved through a range of processes including budding, regeneration, and fusion of progeny and unrelated polyps, with the possibility for a genetic conflict resolution mechanism. Together these processes contribute to the reevolution of the ecologically important trait of coloniality in E. larynx

First records of Ostreopsis heptagona, O. cf. siamensis and O. cf. ovata – in the Azores archipelago, Portugal

Copyright © 2010 IOC HAB Programme.During summer 2008, surveys were carried out around São Miguel island in the Azores archipelago (36–39ºN, 25–31ºW). [...]. Species of Ostreopsis were morphologically characterized with an Olympus BX50 equipped with epifluorescence, following Penna et al. [...].Governo Regional dos Açores

Effects of Clonal Reproduction of Evolutionary Lag and Evolutionary Rescue

Evolutionary lag—the difference between mean and optimal phenotype in the current environment—is of keen interest in light of rapid environmental change. Many ecologically important organisms have life histories that include stage structure and both sexual and clonal reproduction, yet how stage structure and clonality interplay to govern a population’s rate of evolution and evolutionary lag is unknown. Effects of clonal reproduction on mean phenotype partition into two portions: one that is phenotype dependent, and another that is genotype dependent. This partitioning is governed by the association between the nonadditive genetic plus random environmental component of phenotype of clonal offspring and their parents. While clonality slows phenotypic evolution toward an optimum, it can dramatically increase population survival after a sudden step change in optimal phenotype. Increased adult survival slows phenotypic evolution but facilitates population survival after a step change; this positive effect can, however, be lost given survival-fecundity trade-offs. Simulations indicate that the benefits of increased clonality under environmental change greatly depend on the nature of that change: increasing population persistence under a step change while decreasing population persistence under a continuous linear change requiring de novo variation. The impact of clonality on the probability of persistence for species in a changing world is thus inexorably linked to the temporal texture of the change they experience

Asymptotic expansion for damped wave equations with periodic coefficients

We consider a linear dissipative wave equation in IRN with periodic coefficients. By means of Bloch wave decomposition, we obtain an expansion of solutions as t ! 1 and conclude that, in a first approximation, the solutions behave as the homogenized heat kernel

Incompressible flow in porous media with fractional diffusion

In this paper we study the heat transfer with a general fractional diffusion term of an incompressible fluid in a porous medium governed by Darcy's law. We show formation of singularities with infinite energy and for finite energy we obtain existence and uniqueness results of strong solutions for the sub-critical and critical cases. We prove global existence of weak solutions for different cases. Moreover, we obtain the decay of the solution in $L^p$, for any $p\geq2$, and the asymptotic behavior is shown. Finally, we prove the existence of an attractor in a weak sense and, for the sub-critical dissipative case with $\alpha\in (1,2]$, we obtain the existence of the global attractor for the solutions in the space $H^s$ for any $s > (N/2)+1-\alpha$

Linking Dynamical and Population Genetic Models of Persistent Viral Infection

This article develops a theoretical framework to link dynamical and population genetic models of persistent viral infection. This linkage is useful because, while the dynamical and population genetic theories have developed independently, the biological processes they describe are completely interrelated. Parameters of the dynamical models are important determinants of evolutionary processes such as natural selection and genetic drift. We develop analytical methods, based on coupled differential equations and Markov chain theory, to predict the accumulation of genetic diversity within the viral population as a function of dynamical parameters. These methods are first applied to the standard model of viral dynamics and then generalized to consider the infection of multiple host cell types by the viral population. Each cell type is characterized by specific parameter values. Inclusion of multiple cell types increases the likelihood of persistent infection and can increase the amount of genetic diversity within the viral population. However, the overall rate of gene sequence evolution may actually be reduced