Turbulent Kinetic Energy Dissipation in Barrow Canyon

Pacific Water flows across the shallow Chukchi Sea before reaching the Arctic Ocean, where it is a source of heat, freshwater, nutrients, and carbon. A substantial portion of Pacific Water is routed through Barrow Canyon, located in the northeast corner of the Chukchi. Barrow Canyon is a region of complex geometry and forcing where a variety of water masses have been observed to coexist. These factors contribute to a dynamic physical environment, with the potential for significant water mass transformation. The measurements of turbulent kinetic energy dissipation presented here indicate diapycnal mixing is important in the upper canyon. Elevated dissipation rates were observed near the pycnocline, effectively mixing winter and summer water masses, as well as within the bottom boundary layer. The slopes of shear/stratification layers, combined with analysis of rotary spectra, suggest that near-inertial wave activity may be important in modulating dissipation near the bottom. Because the canyon is known to be a hotspot of productivity with an active benthic community, mixing may be an important factor in maintenance of the biological environment.Keywords: Continental shelf/slope, Arctic, Small scale processes, Mixin

The Effect of Race/Ethnicity on the Age of Colon Cancer Diagnosis

ABSTRACT BACKGROUND: Colorectal cancer is the third most commonly diagnosed cancer in the United States. Notably, racial/ethnic disparities exist in both incidence and mortality. PURPOSE: The aim of this case study was to investigate the impact of race/ethnicity on age at diagnosis of colorectal cancer in a defined population in Suffolk County, NY. METHODS: Data were retrospectively collected on race/ethnicity, health insurance status, age at diagnosis, stage at diagnosis, gender, smoking status, alcohol intake, tumor location, and body mass index for colorectal cancer patients with medical records in the Stony Brook University Medical Center database (2005-2011). Population-based data on Hispanic and non-Hispanic Whites were obtained from the Surveillance, Epidemiology, and End Results registry of New York State for an overlapping time period. Permutation-based ANCOVA and logistic regression with stepwise variable selection were conducted to identify covariates and first-order interactions associated with younger age at diagnosis and cancer stage as a dependent categorical variable. RESULTS: Of 328 colorectal cancer patients, Hispanics were diagnosed at a median younger age of 57y vs. 67y than non-Hispanic Whites (FDR = 0.001). Twenty-six percent of Hispanics were diagnosed with colorectal cancer prior to the recommended age (50y) for colorectal cancer surveillance compared to 11% of non-Hispanic Whites (FDR =0.007). Analysis of New York State registry data corroborated our findings that Hispanic colorectal cancer patients were diagnosed at a median younger age than non-Hispanic Whites. Permutation-based ANCOVA identified race/ethnicity and health insurance as significantly associated with age of diagnosis (P=0.001). Logistic regression selected (younger) age at diagnosis as being significantly associated with stage IV disease. The limitations of the case study reside in the use of self-reporting of race and ethnicity and in the small sample sizes. CONCLUSIONS: Hispanics may be at higher risk for colorectal cancer (y) and younger age at diagnosis is associated with advanced disease

Wind-driven modification of the Alaskan coastal current

Across-shelf transects over the eastern flank of Barrow Canyon were obtained in August 2005 with an autonomous underwater vehicle (AUV). Here, the shelf topography creates a “choke” point in which a substantial portion of Pacific inflow from the Bering Strait is concentrated within 30 km of the coast, providing an ideal setup for monitoring the flow with the AUV. Four transects, extending ~10 km offshore of Barrow, Alaska, inshore of the ~80 m isobath, were used in conjunction with a process-oriented numerical model to diagnose the wind-driven modification of the Alaskan coastal current. Poleward transports of 0.12 Sv were consistent among all sections, although the transport-weighted temperature was about 1°C colder in the transect obtained during peak winds. An idealized numerical model reproduces the observed hydrographic structure and across-shelf circulation reasonably well in that (1) winds were not sufficient to reverse the poleward flow, (2) upwelling was most pronounced in the nearshore, and (3) the onshore return flow occurred throughout the interior as opposed to the bottom boundary layer. The across-shelf circulation provides a possible mechanism for a meltwater intrusion observed on the offshore side of the AUV transect made during peak winds. Also of interest is that the observed anticyclonic shear was much stronger (∣∂u/∂y∣ > f) than previously measured in the region

Nonlinear internal waves over New Jersey's continental shelf

Author Posting. © American Geophysical Union, 2011. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 116 (2011): C03022, doi:10.1029/2010JC006332.Ship and mooring data collected off the coast of New Jersey are used to describe the nonlinear internal wave (NLIW) field and the background oceanographic conditions that formed the waveguide on the shelf. The subinertial, inertial, and tidal circulation are described in detail, and the background fluid state is characterized using the coefficients of the extended Korteweg–de Vries equation. The utility of this type of analysis is demonstrated in description of an amplitude-limited, flat wave. NLIWs observed over most of the month had typical displacements of −8 m, but waves observed from 17–21 August were almost twice as large with displacements near −15 m. During most of the month, wave packets occurred irregularly at a fixed location, and often more than one packet was observed per M2 tidal period. In contrast, the arrival times of the large-amplitude wave groups observed over 17–21 August were more closely phased with the barotropic tide. The time span in which the largest NLIWs were observed corresponded to neap barotropic conditions, but when the shoreward baroclinic energy flux was elevated. During the time of large NLIWs, near-inertial waves were a dominate contributor to the internal motions on the shelf and apparently regulated wave formation, as destructive/constructive modulation of the M2 internal tide by the inertial wavefield at the shelf break corresponded to stronger/weaker NLIWs on the shelf.This work was funded by the Office of Naval Research

Observations and modeling of a hydrothermal plume in Yellowstone Lake

Author Posting. © American Geophysical Union, 20XX. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 46(12), (2019): 6435-6442, doi:10.1029/2019GL082523.Acoustic Doppler current profiler and conductivity‐temperature‐depth data acquired in Yellowstone Lake reveal the presence of a buoyant plume above the “Deep Hole” hydrothermal system, located southeast of Stevenson Island. Distributed venting in the ~200 × 200‐m hydrothermal field creates a plume with vertical velocities of ~10 cm/s in the mid‐water column. Salinity profiles indicate that during the period of strong summer stratification the plume rises to a neutral buoyancy horizon at ~45‐m depth, corresponding to a ~70‐m rise height, where it generates an anomaly of ~5% (−0.0014 psu) relative to background lake water. We simulate the plume with a numerical model and find that a heat flux of 28 MW reproduces the salinity and vertical velocity observations, corresponding to a mass flux of 1.4 × 103 kg/s. When observational uncertainties are considered, the heat flux could range between 20 to 50 MW.The authors thank Yellowstone National Park Fisheries and Aquatic Sciences, The Global Foundation for Ocean Exploration, and Paul Fucile for logistical support. This research was supported by the National Science Foundation grants EAR‐1516361 to R. S., EAR‐1514865 to K. L., and EAR‐1515283 to R. H. and J. F. All work in Yellowstone National Park was completed under an authorized Yellowstone research permit (YELL‐2018‐SCI‐7018). CTD and ADCP profiles reported in this paper are available through the Marine Geoscience Data System (doi:10.1594/IEDA/324713 and doi:10.1594/IEDA/324712, accessed last on 17 April 2019, respectively).2019-11-0

Mode 2 waves on the continental shelf : ephemeral components of the nonlinear internal wavefield

Shoreward propagating, mode 2 nonlinear waves appear sporadically in mooring records obtained off the coast of New Jersey in the summer of 2006. Individual mode 2 packets were tracked between two moorings separated by 1 km; however, packets could not be tracked between moorings separated by greater distances from one another (∼10 km). The inability to track individual packets large distances through the mooring array combined with detailed observations from a ship suggest that these waves are short lived. The evolution of the ship‐tracked wave group was recorded using acoustic backscatter, acoustic Doppler current profilers, and turbulence profiling. The leading mode 2 wave quickly changed form and developed a tail of short, small‐amplitude mode 1 waves. The wavelength of the mode 1 oscillations agreed with that expected for a copropagating tail on the basis of linear theory. Turbulent dissipation in the mixed layer and radiation of the short mode 1 waves contributed to rapid energy loss in the leading mode 2 wave, consistent with the observed decay rate and short life span of only a few hours. The energy in the leading mode 2 wave was 10–100 times smaller than the energy of mode 1 nonlinear internal waves observed during the experiment; however, the magnitudes of wave‐localized turbulent dissipation were similar

Vertical heat flux and lateral mass transport in nonlinear internal waves

Comprehensive observations of velocity, density, and turbulent dissipation permit quantification of the nonlinear internal wave (NLIW) contribution to vertical heat flux and lateral mass transport over New Jersey’s shelf. The effect of NLIWs on the shelf heat budget was significant. On average, heat flux in NLIWs was 10 times larger than background at the pycnocline depth. NLIWs were present at midshelf <10% of the time, yet we estimate that they contributed roughly one−half the heat flux across the pycnocline during the observation period, which was characterized by weak to moderate winds. Lateral transport distances due to the leading 3 waves in NLIW packets were typically (100 m) but ranged several kilometers. The month‐averaged daily onshore transport (per unit alongshelf dimension) by NLIWs is estimated as 0.3 m2s⁻¹. This is comparable to a weak downwelling wind, but sustained over an entire month

Nonlinear internal waves over New Jersey's continental shelf

Ship and mooring data collected off the coast of New Jersey are used to describe the nonlinear internal wave (NLIW) field and the background oceanographic conditions that formed the waveguide on the shelf. The subinertial, inertial, and tidal circulation are described in detail, and the background fluid state is characterized using the coefficients of the extended Korteweg–de Vries equation. The utility of this type of analysis is demonstrated in description of an amplitude-limited, flat wave. NLIWs observed over most of the month had typical displacements of −8 m, but waves observed from 17–21 August were almost twice as large with displacements near −15 m. During most of the month, wave packets occurred irregularly at a fixed location, and often more than one packet was observed per M₂ tidal period. In contrast, the arrival times of the large-amplitude wave groups observed over 17–21 August were more closely phased with the barotropic tide. The time span in which the largest NLIWs were observed corresponded to neap barotropic conditions, but when the shoreward baroclinic energy flux was elevated. During the time of large NLIWs, near-inertial waves were a dominate contributor to the internal motions on the shelf and apparently regulated wave formation, as destructive/constructive modulation of the M₂ internal tide by the inertial wavefield at the shelf break corresponded to stronger/weaker NLIWs on the shelf

Vertical heat flux and lateral mass transport in nonlinear internal waves

Author Posting. © American Geophysical Union, 2010. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 37 (2010): L08601, doi:10.1029/2010GL042715.Comprehensive observations of velocity, density, and turbulent dissipation permit quantification of the nonlinear internal wave (NLIW) contribution to vertical heat flux and lateral mass transport over New Jersey's shelf. The effect of NLIWs on the shelf heat budget was significant. On average, heat flux in NLIWs was 10 times larger than background at the pycnocline depth. NLIWs were present at midshelf <10% of the time, yet we estimate that they contributed roughly one−half the heat flux across the pycnocline during the observation period, which was characterized by weak to moderate winds. Lateral transport distances due to the leading 3 waves in NLIW packets were typically inline equation(100 m) but ranged several kilometers. The month-averaged daily onshore transport (per unit alongshelf dimension) by NLIWs is estimated as 0.3 m2s−1. This is comparable to a weak downwelling wind, but sustained over an entire month.This work was funded by the Office of Naval Research

Energy transformations and dissipation of nonlinear internal waves over New Jersey's continental shelf

The energetics of large amplitude, high-frequency nonlinear internal waves (NLIWs) observed over the New Jersey continental shelf are summarized from ship and mooring data acquired in August 2006. NLIW energy was typically on the order of 10⁵ Jm⁻¹, and the wave dissipative loss was near 50 W m⁻¹. However, wave energies (dissipations) were ~10 (~2) times greater than these values during a particular week-long period. In general, the leading waves in a packet grew in energy across the outer shelf, reached peak values near 40 km inshore of the shelf break, and then lost energy to turbulent mixing. Wave growth was attributed to the bore-like nature of the internal tide, as wave groups that exhibited larger long-term (lasting for a few hours) displacements of the pycnocline offshore typically had greater energy inshore. For ship-observed NLIWs, the average dissipative loss over the region of decay scaled with the peak energy in waves; extending this scaling to mooring data produces estimates of NLIW dissipative loss consistent with those made using the flux divergence of wave energy. The decay time scale of the NLIWs was approximately 12 h corresponding to a length scale of 35 km (O(100) wavelengths). Imposed on these larger scale energetic trends, were short, rapid exchanges associated with wave interactions and shoaling on a localized topographic rise. Both of these events resulted in the onset of shear instabilities and large energy loss to turbulent mixing