Divergent Mechanistic Avenues to an Aliphatic Polyesteracetal or Polyester from a Single Cyclic Esteracetal

The cyclic esteracetal 2-methyl-1,3-dioxane-4-one (MDO) was polymerized in bulk using diethyl zinc as the catalyst and benzyl alcohol as the initiator to yield either the corresponding polyesteracetal (PMDO) or the aliphatic polyester poly­(3-hydroxypropionic acid) (PHPA) at low and high catalyst concentrations, respectively. Spectral analysis gave evidence for distinct propagating species in the two catalyst concentration regimes. At low zinc concentrations ring opening by attack of the initiating species at the acetal functionality, yielding a zinc carboxylate, followed by propagation to yield pure PMDO was implicated. At high zinc concentrations we propose that ring opening via attack at the ester functionality produced a labile zinc hemiacetal, which rapidly and irreversibly expelled acetaldehyde to form a propagating zinc alkoxide and ultimately pure PHPA. Initial rate studies indicated that the rate of PHPA formation had a second-order dependence on zinc concentration; in contrast, the rate of PMDO formation was first order in zinc concentration. High molar mass PMDO exhibited only a glass transition temperature (<i>T</i>_g) ≈ −30 °C, whereas high molar mass PHPA had a <i>T</i>_g ≈ −30 °C and a melting temperature (<i>T</i>_m) ≈ 77 °C. When PHPA and PMDO were subjected to neutral or slightly acidic environments, PMDO exhibited expedited degradation as compared with PHPA

Mechanistic principles of nanoparticle evolution to zeolite crystals

Precursor nanoparticles that form spontaneously on hydrolysis of tetraethylorthosilicate in aqueous solutions of tetrapropylammonium (TPA) hydroxide evolve to TPA-silicalite-1, a molecular-sieve crystal that serves as a model for the self-assembly of porous inorganic materials in the presence of organic structure-directing agents. The structure and role of these nanoparticles are of practical significance for the fabrication of hierarchically ordered porous materials and molecular-sieve films, but still remain elusive. Here we show experimental findings of nanoparticle and crystal evolution during room-temperature ageing of the aqueous suspensions that suggest growth by aggregation of nanoparticles. A kinetic mechanism suggests that the precursor nanoparticle population is distributed, and that the 5-nm building units contributing most to aggregation only exist as an intermediate small fraction. The proposed oriented-aggregation mechanism should lead to strategies for isolating or enhancing the concentration of crystal-like nanoparticles

Requirements for DNA hairpin formation by RAG1/2

The rearrangement of antigen receptor genes is initiated by double-strand breaks catalyzed by the RAG1/2 complex at the junctions of recombination signal sequences and coding segments. As with some “cut-and-paste” transposases, such as Tn5 and Hermes, a DNA hairpin is formed at one end of the break via a nicked intermediate. By using abasic DNA substrates, we show that different base positions are important for the two steps of cleavage. Removal of one base in the coding flank enhances hairpin formation, bypassing a requirement for a paired complex of two signal sequences. Rescue by abasic substrates is consistent with a base-flip mechanism seen in the crystal structure of the Tn5 postcleavage complex and may mimic the DNA changes on paired complex formation. We have searched for a tryptophan residue in RAG1 that would be the functional equivalent of W298 in Tn5, which stabilizes the DNA interaction by stacking the flipped base on the indole ring. A W956A mutation in RAG1 had an inhibitory effect on both nicking and hairpin stages that could be rescued by abasic substrates. W956 is therefore a likely candidate for interacting with this base during hairpin formation