Annual chronotypes functionally link life histories and life cycles in birds

© 2018 The Authors. Functional Ecology © 2018 British Ecological Society Life-history responses to ecological selection pressures can be described by a slow–fast life-history axis. Along this axis, fast-living animals usually invest in high breeding output, whereas slow-living ones prioritize their own survival. Birds may solve the trade-off between reproduction and survival by optimizing their seasonal schedules. Breeding early tends to facilitate reproductive success, whereas breeding late increases the chances to survive. On the basis of this argument, short- and long-lived birds should benefit from initiating spring activities earlier and later, respectively. The timing of seasonal activities, all else being equal, depends on the architecture of endogenous circannual clocks. Particularly, the length of the circannual period relative to the 365-day environmental year either facilitates the anticipation of seasonal activities (in case of periods shorter than 365 days) or represents a responsive mode (when periods are longer than 365 days). The two alternatives will be manifested by early or late annual chronotypes, respectively. We hypothesize that in birds, annual chronotype will correspond with position on the “pace-of-life scale.” Species with low survival probability, and thus a poor chance of breeding in a next season, should show early annual chronotypes facilitated by circannual-clock periods shorter than 365 days. In contrast, species with high survival rates should benefit from relatively long circannual periods. We predicted that circannual-period lengths should correlate positively with species-specific adult annual survival rates. Using published data for 16 wild bird species, we confirmed the predicted correlation. In our analysis, we accounted for the possible metabolic nature of circannual clocks, a correlation between rate of metabolism and survival, and phylogenetic relationships. On the basis of our finding, we propose that evolutionary responsive circannual clocks help birds cope with temporal variation in the environment in ways that are most appropriate for their life-history and life-table attributes. A plain language summary is available for this article

FLightR: An r package for reconstructing animal paths from solar geolocation loggers

© 2017 British Ecological Society.Solar geolocators are relatively cheap and simple tools which are widely used to study the migration of animals, especially birds. The methods to estimate the geographic positions from the light-intensity patterns collected by these loggers, however, are still under development. The accurate reconstruction of the annual schedules and movement patterns of individual animals requires analytical methods which provide estimates of daily locations, distances between the locations and the directions of movement, with measures of their uncertainty. The new r package FLightR meets all these requirements. It enables refined and statistically validated estimations of movement patterns of birds. Here, we present main features of this advanced package

A hidden Markov model for reconstructing animal paths from solar geolocation loggers using templates for light intensity

Background Solar archival tags (henceforth called geolocators) are tracking devices deployed on animals to reconstruct their long-distance movements on the basis of locations inferred post hoc with reference to the geographical and seasonal variations in the timing and speeds of sunrise and sunset. The increased use of geolocators has created a need for analytical tools to produce accurate and objective estimates of migration routes that are explicit in their uncertainty about the position estimates. Results We developed a hidden Markov chain model for the analysis of geolocator data. This model estimates tracks for animals with complex migratory behaviour by combining: (1) a shading-insensitive, template-fit physical model, (2) an uncorrelated random walk movement model that includes migratory and sedentary behavioural states, and (3) spatially explicit behavioural masks. The model is implemented in a specially developed open source R package FLightR. We used the particle filter (PF) algorithm to provide relatively fast model posterior computation. We illustrate our modelling approach with analysis of simulated data for stationary tags and of real tracks of both a tree swallow Tachycineta bicolor migrating along the east and a golden-crowned sparrow Zonotrichia atricapilla migrating along the west coast of North America. Conclusions We provide a model that increases accuracy in analyses of noisy data and movements of animals with complicated migration behaviour. It provides posterior distributions for the positions of animals, their behavioural states (e.g., migrating or sedentary), and distance and direction of movement. Our approach allows biologists to estimate locations of animals with complex migratory behaviour based on raw light data. This model advances the current methods for estimating migration tracks from solar geolocation, and will benefit a fast-growing number of tracking studies with this technology

現行民法典を創った人びと（3）起草委員 : 穂積陳重・富井政章・梅謙次郎

Aim Over the last two decades, thousands of northward migrating ruffs (Philomachus pugnax) have disappeared from western European staging sites. These migratory ruffs were partly temperate breeding birds, but most individuals head towards the Eurasian Arctic tundras where 95% of the global population breeds. This regional decline may represent either: (1) local loss of breeding birds in western Europe, (2) a global decline, (3) shift(s) in distribution or (4) a combination of these.Location Northern Eurasia.Methods To put the declines in western Europe in context, we analysed Arctic monitoring data from the last two decades (Soloviev & Tomkovich, 2009) to detect changes in regional breeding densities across northern Eurasia. We used a novel approach applying generalized additive modelling (GAM) and generalized estimations equations (GEE).Results We show that the global breeding population of ruffs has made a significant eastwards shift into the Asian part of the breeding range. In the European Arctic, ruffs decreased during the last 18 years. At the same time, in western Siberia, ruffs increased. In eastern Siberia, no significant population changes could be detected. These changes corroborate the finding that during northward migration, growing numbers of ruffs avoided staging areas in the Netherlands and Sweden and started migrating along a more easterly route leading into western Siberia.Main conclusions We detected an unprecedented large-scale population redistribution of ruffs and suggest that this is a response to loss of habitat quality at the traditional staging site in the Netherlands

A global population redistribution in a migrant shorebird detected with continent-wide qualitative breeding survey data

Aim Over the last two decades, thousands of northward migrating ruffs (Philomachus pugnax) have disappeared from western European staging sites. These migratory ruffs were partly temperate breeding birds, but most individuals head towards the Eurasian Arctic tundras where 95% of the global population breeds. This regional decline may represent either: (1) local loss of breeding birds in western Europe, (2) a global decline, (3) shift(s) in distribution or (4) a combination of these.Location Northern Eurasia.Methods To put the declines in western Europe in context, we analysed Arctic monitoring data from the last two decades (Soloviev & Tomkovich, 2009) to detect changes in regional breeding densities across northern Eurasia. We used a novel approach applying generalized additive modelling (GAM) and generalized estimations equations (GEE).Results We show that the global breeding population of ruffs has made a significant eastwards shift into the Asian part of the breeding range. In the European Arctic, ruffs decreased during the last 18 years. At the same time, in western Siberia, ruffs increased. In eastern Siberia, no significant population changes could be detected. These changes corroborate the finding that during northward migration, growing numbers of ruffs avoided staging areas in the Netherlands and Sweden and started migrating along a more easterly route leading into western Siberia.Main conclusions We detected an unprecedented large-scale population redistribution of ruffs and suggest that this is a response to loss of habitat quality at the traditional staging site in the Netherlands. © 2010 Blackwell Publishing Ltd

Inherent limits of light-level geolocation may lead to over-interpretation

In their 2015 Current Biology paper, Streby et al. [1] reported that Golden-winged Warblers (Vermivora chrysoptera), which had just migrated to their breeding location in eastern Tennessee, performed a facultative and up to “>1,500 km roundtrip” to the Gulf of Mexico to avoid a severe tornadic storm. From light-level geolocator data, wherein geographical locations are estimated via the timing of sunrise and sunset, Streby et al. [1] concluded that the warblers had evacuated their breeding area approximately 24 hours before the storm and returned about five days later. The authors presented this finding as evidence that migratory birds avoid severe storms by temporarily moving long-distances. However, the tracking method employed by Streby et al. [1] is prone to considerable error and uncertainty. Here, we argue that this interpretation of the data oversteps the limits of the used tracking technique. By calculating the expected geographical error range for the tracked birds, we demonstrate that the hypothesized movements fell well within the geolocators’ inherent error range for this species and that such deviations in latitude occur frequently even if individuals remain stationary