An Analysis of Fluvial Geomorphology Parameters Affecting Meander Migration and Dynamic Equilibrium of the White River in Arkansas

An analysis of a multitude of fluvial and morphological parameters was conducted to assess the current stability conditions of various White River reaches and to accentuate the contributions imparted by these parameters to the internal processes that governed the dynamic equilibrium within these reaches. The initial step involved the extractions and computations of pertinent fluvial and morphological parameters from the HEC-RAS Model and ArcGIS.Channel stability assessment emphasized three methodologies, namely stability assessment through parametric correlations between fluvial and morphological parameters; stability evaluation with the Rosgen Stream Classification System; and stability estimation through sediment analyses and sediment related parametric correlations. Morphological assessment implementing the Rosgen Stream Classification (RSC) system consisted of four inventory levels of classification. Sediment analyses conducted by implementing several sediment transport functions utilized the dominant bed materials attained from sieve analyses of approximately seven hundred soil samples collected from the channels of various ‘reference’ reaches

Efficient Denoising and Sharpening of Color Images through Numerical Solution of Nonlinear Diffusion Equations

The purpose of this project is to enhance color images through denoising and sharpening, two important branches of image processing, by mathematically modeling the images. Modifications are made to two existing nonlinear diffusion image processing models to adapt them to color images. This is done by treating the red, green, and blue (RGB) channels of color images independently, contrary to the conventional idea that the channels should not be treated independently. A new numerical method is needed to solve our models for high resolution images since current methods are impractical. To produce an efficient method, the solution is represented as a linear combination of sines and cosines for easier numerical treatment and then computed by a combination of Krylov subspace spectral (KSS) methods and exponential propagation iterative (EPI) methods. Numerical experiments demonstrate that the proposed approach for image processing is effective for denoising and sharpening

Associations of Underlying Health Conditions With Anxiety and Depression Among Outpatients: Modification Effects of Suspected COVID-19 Symptoms, Health-Related and Preventive Behaviors

Objectives: We explored the association of underlying health conditions (UHC) with depression and anxiety, and examined the modification effects of suspected COVID-19 symptoms (S-COVID-19-S), health-related behaviors (HB), and preventive behaviors (PB).Methods: A cross-sectional study was conducted on 8,291 outpatients aged 18–85 years, in 18 hospitals and health centers across Vietnam from 14th February to May 31, 2020. We collected the data regarding participant's characteristics, UHC, HB, PB, depression, and anxiety.Results: People with UHC had higher odds of depression (OR = 2.11; p < 0.001) and anxiety (OR = 2.86; p < 0.001) than those without UHC. The odds of depression and anxiety were significantly higher for those with UHC and S-COVID-19-S (p < 0.001); and were significantly lower for those had UHC and interacted with “unchanged/more” physical activity (p < 0.001), or “unchanged/more” drinking (p < 0.001 for only anxiety), or “unchanged/healthier” eating (p < 0.001), and high PB score (p < 0.001), as compared to those without UHC and without S-COVID-19-S, “never/stopped/less” physical activity, drinking, “less healthy” eating, and low PB score, respectively.Conclusion: S-COVID-19-S worsen psychological health in patients with UHC. Physical activity, drinking, healthier eating, and high PB score were protective factors

Social Contact Patterns in Vietnam and Implications for the Control of Infectious Diseases

BACKGROUND: The spread of infectious diseases from person to person is determined by the frequency and nature of contacts between infected and susceptible members of the population. Although there is a long history of using mathematical models to understand these transmission dynamics, there are still remarkably little empirical data on contact behaviors with which to parameterize these models. Even starker is the almost complete absence of data from developing countries. We sought to address this knowledge gap by conducting a household based social contact diary in rural Vietnam. METHODS AND FINDINGS: A diary based survey of social contact patterns was conducted in a household-structured community cohort in North Vietnam in 2007. We used generalized estimating equations to model the number of contacts while taking into account the household sampling design, and used weighting to balance the household size and age distribution towards the Vietnamese population. We recorded 6675 contacts from 865 participants in 264 different households and found that mixing patterns were assortative by age but were more homogenous than observed in a recent European study. We also observed that physical contacts were more concentrated in the home setting in Vietnam than in Europe but the overall level of physical contact was lower. A model of individual versus household vaccination strategies revealed no difference between strategies in the impact on R(0). CONCLUSIONS AND SIGNIFICANCE: This work is the first to estimate contact patterns relevant to the spread of infections transmitted from person to person by non-sexual routes in a developing country setting. The results show interesting similarities and differences from European data and demonstrate the importance of context specific data

Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics

Angiotensin-converting enzyme 2 (ACE2) and accessory proteases (TMPRSS2 and CTSL) are needed for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) cellular entry, and their expression may shed light on viral tropism and impact across the body. We assessed the cell-type-specific expression of ACE2, TMPRSS2 and CTSL across 107 single-cell RNA-sequencing studies from different tissues. ACE2, TMPRSS2 and CTSL are coexpressed in specific subsets of respiratory epithelial cells in the nasal passages, airways and alveoli, and in cells from other organs associated with coronavirus disease 2019 (COVID-19) transmission or pathology. We performed a meta-analysis of 31 lung single-cell RNA-sequencing studies with 1,320,896 cells from 377 nasal, airway and lung parenchyma samples from 228 individuals. This revealed cell-type-specific associations of age, sex and smoking with expression levels of ACE2, TMPRSS2 and CTSL. Expression of entry factors increased with age and in males, including in airway secretory cells and alveolar type 2 cells. Expression programs shared by ACE2+TMPRSS2+ cells in nasal, lung and gut tissues included genes that may mediate viral entry, key immune functions and epithelial-macrophage cross-talk, such as genes involved in the interleukin-6, interleukin-1, tumor necrosis factor and complement pathways. Cell-type-specific expression patterns may contribute to the pathogenesis of COVID-19, and our work highlights putative molecular pathways for therapeutic intervention

An integrated cell atlas of the lung in health and disease

Single-cell technologies have transformed our understanding of human tissues. Yet, studies typically capture only a limited number of donors and disagree on cell type definitions. Integrating many single-cell datasets can address these limitations of individual studies and capture the variability present in the population. Here we present the integrated Human Lung Cell Atlas (HLCA), combining 49 datasets of the human respiratory system into a single atlas spanning over 2.4 million cells from 486 individuals. The HLCA presents a consensus cell type re-annotation with matching marker genes, including annotations of rare and previously undescribed cell types. Leveraging the number and diversity of individuals in the HLCA, we identify gene modules that are associated with demographic covariates such as age, sex and body mass index, as well as gene modules changing expression along the proximal-to-distal axis of the bronchial tree. Mapping new data to the HLCA enables rapid data annotation and interpretation. Using the HLCA as a reference for the study of disease, we identify shared cell states across multiple lung diseases, including SPP1+ profibrotic monocyte-derived macrophages in COVID-19, pulmonary fibrosis and lung carcinoma. Overall, the HLCA serves as an example for the development and use of large-scale, cross-dataset organ atlases within the Human Cell Atlas

Identifying Flow Eddy Currents in the River System as the Riverbank Scouring Cause: A Case Study of the Mekong River

River morphological change is the complex evolution of riverbed states, which can lead to serious riverbank failures, and is a worldwide concern. However, revealing the cause of the evolution, in particular, the potential morphological scouring by eddy currents, is difficult. Accordingly, we propose a comprehensive combination of 2D and 3D simulations to reveal the eddy currents. We selected the Vam Nao, part of the Mekong River, with semi-tidal effects and confluence flows as the case study. We created two unstructured 40 m × 40 m triangular meshes using inverse distance interpolation. This study used the Saint–Venant equations (TELEMAC2D) and Navier–Stokes equations (TELEMAC3D) to reveal the eddy currents for 2009, 2017, and 2018. TELEMAC2D (the simplified form of TELEMAC3D) was assessed for 15 days, 3 months, and 1 year, which met a satisfactory level. The eddy currents’ appearance was verified by local knowledge. We found recirculating currents near the riverbank to the East (right at the riverbank failures), whose velocity was approximately half and 1/3–1/4 of the mainstream flow velocity in the dry and flood seasons, respectively. Our study approach performed well in revealing the eddy currents, which can aid in assessing potential riverbank failures and can be applicable to similar contexts