Efficient generic calibration method for general cameras with single centre of projection

Generic camera calibration is a non-parametric calibration technique that is applicable to any type of vision sensor. However, the standard generic calibration method was developed with the goal of generality and it is therefore sub-optimal for the common case of cameras with a single centre of projection (e.g. pinhole, fisheye, hyperboloidal catadioptric). This paper proposes novel improvements to the standard generic calibration method for central cameras that reduce its complexity, and improve its accuracy and robustness. Improvements are achieved by taking advantage of the geometric constraints resulting from a single centre of projection. Input data for the algorithm is acquired using active grids, the performance of which is characterised. A new linear estimation stage to the generic algorithm is proposed incorporating classical pinhole calibration techniques, and it is shown to be significantly more accurate than the linear estimation stage of the standard method. A linear method for pose estimation is also proposed and evaluated against the existing polynomial method. Distortion correction and motion reconstruction experiments are conducted with real data for a hyperboloidal catadioptric sensor for both the standard and proposed methods. Results show the accuracy and robustness of the proposed method to be superior to those of the standard method

Towards dynamic camera calibration for constrained flexible mirror imaging

Flexible mirror imaging systems consisting of a perspective camera viewing a scene reflected in a flexible mirror can provide direct control over image field-of-view and resolution. However, calibration of such systems is difficult due to the vast range of possible mirror shapes and the flexible nature of the system. This paper proposes the fundamentals of a dynamic calibration approach for flexible mirror imaging systems by examining the constrained case of single dimensional flexing. The calibration process consists of an initial primary calibration stage followed by in-service dynamic calibration. Dynamic calibration uses a linear approximation to initialise a non-linear minimisation step, the result of which is the estimate of the mirror surface shape. The method is easier to implement than existing calibration methods for flexible mirror imagers, requiring only two images of a calibration grid for each dynamic calibration update. Experimental results with both simulated and real data are presented that demonstrate the capabilities of the proposed approach

A comparison of new generic camera calibration with the standard parametric approach

This paper deals with a recently proposed nonparametric approach to camera calibration, which is applicable to any type of sensor design. Currently, no relative quantitative performance data is available for this method. This paper addresses this issue, by providing a comprehensive evaluation with respect to the standard planar calibration technique in the literature. Experiments are conducted on simulated and real data, with the firm conclusion that the generic calibration method has the capability to outperform the standard parametric approach for imaging systems with significant distortion. The results provide important practical information for the vision community at large

Evaluating Southern Ocean biological production in two ocean biogeochemical models on daily to seasonal timescales using satellite chlorophyll and O2 / Ar observations

© The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 12 (2015): 681-695, doi:10.5194/bg-12-681-2015.We assess the ability of ocean biogeochemical models to represent seasonal structures in biomass and net community production (NCP) in the Southern Ocean. Two models are compared to observations on daily to seasonal timescales in four different sections of the region. We use daily satellite fields of chlorophyll (Chl) as a proxy for biomass and in situ observations of O2 and Ar supersaturation (ΔO2 / Ar) to estimate NCP. ΔO2 / Ar is converted to the flux of biologically generated O2 from sea to air (O2 bioflux). All data are aggregated to a climatological year with a daily resolution. To account for potential regional differences within the Southern Ocean, we conduct separate analyses of sections south of South Africa, around the Drake Passage, south of Australia, and south of New Zealand. We find that the models simulate the upper range of Chl concentrations well, underestimate spring levels significantly, and show differences in skill between early and late parts of the growing season. While there is a great deal of scatter in the bioflux observations in general, the four sectors each have distinct patterns that the models pick up. Neither model exhibits a significant distinction between the Australian and New Zealand sectors and between the Drake Passage and African sectors. South of 60° S, the models fail to predict the observed extent of biological O2 undersaturation. We suggest that this shortcoming may be due either to problems with the ecosystem dynamics or problems with the vertical transport of oxygen.This work was supported in part by funding from the National Aeronautic and Space Administration (NASA NNX08AF12G) and the National Science Foundation (NSF OPP-0823101)

Evaluation of the Southern Ocean O2/Ar-based NCP estimates in a model framework

Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 118 (2013): 385–399, doi:10.1002/jgrg.20032.The sea-air biological O2 flux assessed from measurements of surface O2 supersaturation in excess of Ar supersaturation (“O2 bioflux”) is increasingly being used to constrain net community production (NCP) in the upper ocean mixed layer. In making these calculations, one generally assumes that NCP is at steady state, mixed layer depth is constant, and there is no O2 exchange across the base of the mixed layer. The object of this paper is to evaluate the magnitude of errors introduced by violations of these assumptions. Therefore, we examine the differences between the sea-air biological O2 flux and NCP in the Southern Ocean mixed layer as calculated using two ocean biogeochemistry general circulation models. In this approach, NCP is considered a known entity in the prognostic model, whereas O2 bioflux is estimated using the model-predicted O2/Ar ratio to compute the mixed layer biological O2 saturation and the gas transfer velocity to calculate flux. We find that the simulated biological O2 flux gives an accurate picture of the regional-scale patterns and trends in model NCP. However, on local scales, violations of the assumptions behind the O2/Ar method lead to significant, non-uniform differences between model NCP and biological O2 flux. These errors arise from two main sources. First, venting of biological O2 to the atmosphere can be misaligned from NCP in both time and space. Second, vertical fluxes of oxygen across the base of the mixed layer complicate the relationship between NCP and the biological O2 flux. Our calculations show that low values of O2 bioflux correctly register that NCP is also low (<10 mmol m−2 day−1), but fractional errors are large when rates are this low. Values between 10 and 40 mmol m−2 day−1 in areas with intermediate mixed layer depths of 30 to 50 m have the smallest absolute and relative errors. Areas with O2 bioflux higher than 30 mmol m−2 day−1 and mixed layers deeper than 40 m tend to underestimate NCP by up to 20 mmol m−2 day−1. Excluding time periods when mixed layer biological O2 is undersaturated, O2 bioflux underestimates time-averaged NCP by 5%–15%. If these time periods are included, O2 bioflux underestimates mixed layer NCP by 20%–35% in the Southern Ocean. The higher error estimate is relevant if one wants to estimate seasonal NCP since a significant amount of biological production takes place when mixed layer biological O2 is undersaturated.This work was supported in part by funding from the National Aeronautic and Space Administration (NASA NNX08AF12G) and National Science Foundation (NSF OPP-0823101)

Development of calcium phosphate cement for the augmentation of traumatically fractured porcine specimens using vertebroplasty

AbstractThe study aim was to develop and apply an experimental technique to determine the biomechanical effect of polymethylmethacrylate (PMMA) and calcium phosphate (CaP) cement on the stiffness and strength of augmented vertebrae following traumatic fracture. Twelve burst type fractures were generated in porcine three-vertebra segments. The specimens were randomly split into two groups (n=6), imaged using microCT and tested under axial loading. The two groups of fractured specimens underwent a vertebroplasty procedure, one group was augmented with CaP cement designed and developed at Queen's University Belfast. The other group was augmented with PMMA cement (WHW Plastics, Hull, UK). The specimens were imaged and re-tested . An intact single vertebra specimen group (n=12) was also imaged and tested under axial loading. A significant decrease (p<0.01) was found between the stiffness of the fractured and intact groups, demonstrating that the fractures generated were sufficiently severe, to adversely affect mechanical behaviour. Significant increase (p<0.01) in failure load was found for the specimen group augmented with the PMMA cement compared to the pre-augmentation group, conversely, no significant increase (p<0.01) was found in the failure load of the specimens augmented with CaP cement, this is attributed to the significantly (p<0.05) lower volume of CaP cement that was successfully injected into the fracture, compared to the PMMA cement. The effect of the percentage of cement fracture fill, cement modulus on the specimen stiffness and ultimate failure load could be investigated further by using the methods developed within this study to test a more injectable CaP cement

Performance of plate-based cytokine flow cytometry with automated data analysis

BACKGROUND: Cytokine flow cytometry (CFC) provides a multiparameter alternative to ELISPOT assays for rapid quantitation of antigen-specific T cells. To increase the throughput of CFC assays, we have optimized methods for stimulating, staining, and acquiring whole blood or PBMC samples in 96-well or 24-well plates. RESULTS: We have developed a protocol for whole blood stimulation and processing in deep-well 24- or 96-well plates, and fresh or cryopreserved peripheral blood mononuclear cell (PBMC) stimulation and processing in conventional 96-well round-bottom plates. Samples from both HIV-1-seronegative and HIV-1-seropositive donors were tested. We show that the percent response, staining intensity, and cell recovery are comparable to stimulation and processing in tubes using traditional methods. We also show the equivalence of automated gating templates to manual gating for CFC data analysis. CONCLUSION: When combined with flow cytometry analysis using an automated plate loader and an automated analysis algorithm, these plate-based methods provide a higher throughput platform for CFC, as well as reducing operator-induced variability. These factors will be important for processing the numbers of samples required in large clinical trials, and for epitope mapping of patient responses

Human IgE responses to Schistosoma mansoni and resistance to reinfection

Schistosoma mansoni infected Kenyan patients were treated and the intensities of their reinfections were followed over the next two years. In addition, their pre- and six month post-treatment serum levels of IgG1-4, IgM, and IgE, specific for schistosomula, egg and adult worm, were measured in ELISA. No reinfection took place before six months post-treatment. Reinfection intensities varied with age; the younger children becoming reinfected at significantly higher intensities than older individuals. When antibody and reinfection levels were compared, only the six month post-treatment IgE response against adult worm correlated negatively with intensities of reinfection and, therefore, was predictive of resistance or immunity to reinfection. IgE and IgG specific Western Blots were carried out. The adult worm antigens recognized by IgE were restricted compared with the IgG responses of the same patients, although no individual antigen was uniquely recognized by the IgE isotype. A dominant 22 kDa antigen was recognized by most but not all high IgE responders. Patients with IgE responses against this antigen suffered significantly lower subsequent levels of reinfection, compared with non-responders. A monospecific rabbit antiserum against the 22 kDa adult worm antigen showed that this antigen is specifically located in the tegument of the adult worm and of 'lung' and 'liver' stage schistosomula, but is absent from the early 'skin' schistosomula. It is possible that this antigen is a target for human IgE mediated immune effector mechanisms active against the post skin stage schistosomula and that this is boosted by the death of adult worms