Absolute abundance estimates from shallow water baited underwater camera surveys; a stochastic modelling approach tested against field data

This research was supported by a University of Glasgow Faculty Scholarship to KMD, a Collaborative Gearing Scheme grant from the Natural Environmental Research Council and the British Antarctic Survey (CGS-77) and an ASSEMBLE infrastructure access grant to DMB.Baited underwater cameras are becoming a popular tool to monitor fish and invertebrate populations within protected and inshore environments where trawl surveys are unsuitable. Modelling the arrival times of deep-sea grenadiers using an inverse square relationship has enabled abundance estimates, comparable to those from bottom trawl surveys, to be gathered from deep-sea baited camera surveys. Baited underwater camera systems in the shallow water environments are however, currently limited to relative comparisons of assemblages based on simple metrics such as MaxN (maximum number of fish seen at any one time). This study describes a stochastic simulation approach used to model the behaviour of fish and invertebrates around a BUC system to enable absolute abundance estimates to be generated from arrival patterns. Species-specific models were developed for the tropical reef fishes the black tip grouper (Epinephelus fasciatus) and moray eel (Gymnothorax spp.) and the Antarctic scavengers; the asteroid (Odontaster validus) and the nemertean worm (Parbolasia corrugatus). A sensitivity analysis explored the impact of input parameters on the arrival patterns (MaxN, time to the arrival of the first individual and the time to reach MaxN) for each species generated by the model. Sensitivity analysis showed a particularly strong link between MaxN and abundance indicating that this model could be used to generate absolute abundances from existing or future MaxN data. It in effect allows the slope of the MaxN vs. abundance relationship to be estimated. Arrival patterns generated by each model were used to estimate population abundance for the focal species and these estimates were compared to data from underwater visual census transects. Using a Bland-Altman analysis, baited underwater camera data processed using this model were shown to generate absolute abundance estimates that were comparable to underwater visual census data.PostprintPeer reviewe

The lifecycle of powerful AGN outflows

During the course of this conference, much evidence was presented that points to an intimate connection between the energetic outflows driven by AGN and the energy budget and quite possibly also the evolution of their gaseous environments. However, it is still not clear if and how the AGN activity is triggered by the cooling gas, how long the activity lasts for and how these effects give rise to the observed distribution of morphologies of the outflows. In this contribution we concentrate on the high radio luminosity end of the AGN population. While most of the heating of the environmental gas may be due to less luminous and energetic outflows, these more powerful objects have a very profound influence on their surroundings. We will describe a simple model for powerful radio galaxies and radio-loud quasars that explains the dichotomy of their large-scale radio morphologies as well as their radio luminosity function.Comment: 6 pages, contribution to 'Heating vs. coooling in galaxies and galaxy clusters', Garching 2006, proceedings to be published by Springer (ESO Astrophysics Symposia), eds. H. Boehringer, P. Schuecker, G.W. Pratt & A. Finogueno

Absolute abundance estimates from shallow water baited underwater camera surveys; a stochastic modelling approach tested against field data

Baited underwater cameras are becoming a popular tool to monitor fish and invertebrate populations within protected and inshore environments where trawl surveys are unsuitable. Modelling the arrival times of deep-sea grenadiers using an inverse square relationship has enabled abundance estimates, comparable to those from bottom trawl surveys, to be gathered from deep-sea baited camera surveys. Baited underwater camera systems in the shallow water environments are however, currently limited to relative comparisons of assemblages based on simple metrics such as MaxN (maximum number of fish seen at any one time). This study describes a stochastic simulation approach used to model the behaviour of fish and invertebrates around a BUC system to enable absolute abundance estimates to be generated from arrival patterns. Species-specific models were developed for the tropical reef fishes the black tip grouper (Epinephelus fasciatus) and moray eel (Gymnothorax spp.) and the Antarctic scavengers; the asteroid (Odontaster validus) and the nemertean worm (Parbolasia corrugatus). A sensitivity analysis explored the impact of input parameters on the arrival patterns (MaxN, time to the arrival of the first individual and the time to reach MaxN) for each species generated by the model. Sensitivity analysis showed a particularly strong link between MaxN and abundance indicating that this model could be used to generate absolute abundances from existing or future MaxN data. It in effect allows the slope of the MaxN vs. abundance relationship to be estimated. Arrival patterns generated by each model were used to estimate population abundance for the focal species and these estimates were compared to data from underwater visual census transects. Using a Bland-Altman analysis, baited underwater camera data processed using this model were shown to generate absolute abundance estimates that were comparable to underwater visual census data.</p

The application of human bone marrow stromal cells and poly(dl-lactic acid) as a biological bone graft extender in impaction bone grafting

Concerns over disease transmission, high costs and limited supply have led to interest in synthetic grafts in the field of impaction bone grafting (IBG). Poly(DL-lactic acid) (PLA) grafts are attractive alternatives due to their biocompatibility, established safety and versatile manufacturing process. This study examined the potential of PLA scaffolds augmented with human bone marrow stromal cells (HBMSCs) in IBG. In vitro and in vivo studies were performed on impacted morsellised PLA seeded with HBMSC and compared to PLA alone. In vitro samples were incubated under osteogenic conditions and in vivo samples were implanted subcutaneously into severely compromised immunodeficient mice, for 4 weeks. Biochemical, histological, mechanical and 3D micro-computed tomography analyses were performed. HBMSC viability, biochemical activity and histological evidence of osteogenic cellular differentiation, post-impaction were observed in vitro and in vivo in PLA/HBMSC samples compared to impacted PLA alone. In vitro PLA/HBMSC samples demonstrated evidence of mechanical enhancement over PLA alone. In vivo studies showed a significant increase in new bone and blood vessel formation in the PLA/HBMSC constructs compared to PLA alone. With alternatives to allograft being sought, these studies have demonstrated PLA/HBMSC living composites, to be a potential prospect as a biological bone graft extender for future use in the field of IBG

A comparison of polymer and polymer-hydroxyapatite composite tissue engineered scaffolds for use in bone regeneration. An in vitro and in vivo study.

Previous in vitro work demonstrated porous PLA and PLGA both had the mechanical strength and sustained the excellent skeletal stem cell (SSC) growth required of an osteogenic bonegraft substitute, for use in impaction bone grafting. The purpose of this investigation was to assess the effects of the addition of hydroxyapatite (HA) to the scaffolds before clinical translation. PLA, PLA+10% HA, PLGA, and PLGA+10% HA were milled and impacted into discs before undergoing a standardized shear test. Cellular compatibility analysis followed 14 days incubation with human skeletal stems cells (SSC). The best two performing polymers were taken forward for in vivo analysis. SSC seeded polymer discs were implanted subcutaneously in mice. All polymers had superior mechanical shear strength compared with allograft (p &lt; 0.01). Excellent SSC survival was demonstrated on all polymers, but the PLA polymers showed enhanced osteoblastic activity (ALP assay p &lt; 0.01) and collagen-1 formation. In vivo analysis was performed on PLA and PLA+10% HA. MicroCT analysis revealed increased bone formation on the PLA HA (p &lt; 0.01), and excellent neo-vessel formation in both samples. Histology confirmed evidence of de novo bone formation. PLA HA showed both enhanced osteoinductive and osteogenic capacity. This polymer composite has been selected for scaled-up experimentation before clinical translation. © 2013 Wiley Periodicals, Inc. J Biomed Mater Res Part A: 102A: 2613-2624, 2014