Additional file 1 of MCProj: metacell projection for interpretable and quantitative use of transcriptional atlases

Additional file 1: Fig S1. Validation: leave-one-batch-out projections. Similar to Fig. 2A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scARCHES. Fig S2. Validation: leave-one-batch-out projections. Similar to Fig. 2A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by Seurat. Fig S3. Validation: leave-one-batch-out projections. Similar to Fig. 2A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scMAP. Fig S4. Validation: leave-one-type-out projections. Similar to Fig. 3A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scARCHES. Fig S5. Validation: leave-one-type-out projections. Similar to Fig. 3A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by Seurat. Fig S6. Validation: leave-one-type-out projections. Similar to Fig. 3A. Counting cells classified according to their reference annotated type and the type assigned to their query metacell by scMAP. Fig S7. The fraction of query cells for which a synthetic technology difference was applied (and was not corrected), which were either not successfully projected, or which were assigned a type different than the expected type, for each of the methods we compared, very close to Fig. 2B