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Methylated cytosines in total poly(A) ESC RNA. (XLSX 761 kb

Enrichment analysis of gene-sets for genes harbouring d<i>e novo</i> variants SZ, ASD and ID, for SysID genes and for genes with an excess of dURVs in SZ.

<p>Enrichment analysis of gene-sets for genes harbouring d<i>e novo</i> variants SZ, ASD and ID, for SysID genes and for genes with an excess of dURVs in SZ.</p

GSA of SATB2_Hipp in EA in hippocampus (Hipp).

<p>Gene-sets and number of genes are plotted on the y-axis. Beta values (effect sizes) as calculated by MAGMA are plotted on the x-axis with P-values shown above each data point. Horizontal bars indicate standard error. Genes categorized as low, medium (med) or high expressed based on their expression in the human hippocampus at pcw 37–1 year and partitioned into SATB2+ and SATB- based on genes being present in the SATB2_Hipp gene-set or not.</p

GSA of SATB2_Hipp in EA in neurons.

<p>Gene-sets and number of genes are plotted on the y-axis. Beta values (effect sizes) as calculated by MAGMA are plotted on the x-axis with P-values shown above each data point. Horizontal bars indicate standard error. Genes categorized as low, medium (med) or high expressed in neurons with medium and high sets partitioned into SATB2+ and SATB- based on genes being present in the SATB2_Hipp gene-set or not.</p

Additional file 10: Table S9. of Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain

Primer sequences. (XLSX 25 kb

Additional file 4: Table S3. of Distinct 5-methylcytosine profiles in poly(A) RNA from mouse embryonic stem cells and brain

Methylated cytosines in total poly(A) ESC RNA. (XLSX 761 kb