Hydrothermal Alteration Mapping Using Landsat 8 and ASTER Data and Geochemical Characteristics of Precambrian Rocks in the Egyptian Shield: A Case Study from Abu Ghalaga, Southeastern Desert, Egypt

This study evaluates the geological attributes of rocks within the Abu Ghalaga area using spatial, geochemical, and petrographic approaches. ASTER and Landsat imagery processed using band ratio and principal component analysis were used to map hydrothermal alterations, while a regional tectonic evaluation was based on automated extraction of lineaments from a digital elevation model. Geochemical and petrographic analyses were then employed for discrete scale evaluation of alteration patterns of rocks across the study location. Based on satellite image processing, alteration patterns across the study area are widespread, while evidence from lineament analysis suggests a dominant NW–SE tectonic trend accompanied by a less dominant ENE–WSW direction. The different rock units exposed in the studied district are arranged chronologically from oldest to youngest as arc metavolcanic group (basalt and rhyolite), arc metagabbro–diorite, gneissose granite (granodiorite and tonalite), and dykes (aplite and felsite). Various types of igneous and metamorphic rocks have propylitic, phyllic, and argillic zones. Geochemical data indicate that the studied rocks are classified into granite, granodiorite, gabbroic diorite, and gabbro. Geochemically, the rocks have a sub-alkaline magma type. The granodiorite–tonalite is derived from the calc–alkaline magma nature, while gabbro and diorite samples exhibit tholeiitic to calc–alkaline affinity. The tectonic setting of the studied rocks trends toward volcanic arc granite (VAG). Based on petrographic, geochemical, and remote analyses, sericitization, chloritization, epidotization, kaolinitization, carbonatization, and silicification are the main alteration types present in the study area. As a result of lineaments analysis, the existing fractures and structural planes form valid flow paths for mineral-bearing hydrothermal solutions. © 2022 by the authors.Universitatea 'Dunărea de Jos' Galați, UDJGThe APC is funded by “Dunarea de Jos” University of Galati, Romania. H.A.A. is funded by a scholarship under the Joint Executive Program between Egypt and Russia.The APC is funded by “Dunarea de Jos”, University of Galati, Romania

Ultramafic Rocks and Their Alteration Products From Northwestern Allaqi Province, Southeastern Desert, Egypt: Petrology, Mineralogy, and Geochemistry

The ophiolitic rocks, island arc metasediments, and granitic rocks are encountered in the study of the Allaqi province. The present study concentrated on ultramafic rocks and their various forms of hydrothermal alteration. Ophiolites commonly occur as dismembered rock sequences and have different types of hydrothermal alteration products. Ophiolites contain the essential type as serpentinites and talc-carbonate rocks, listwaenites, and amphibolites along shear zones and faults. Listwaenite is one of the most significant rocks in this area because it contains gold. The whole serpentinite rocks are affected by regional metamorphosis into greenschist facies. Geochemically, Neoproterozoic serpentinites fall into SSZ ophiolites, alpine-type peridotite, formed in the forearc peridotite tectonic environment. Regardless, the listwaenite and talc-carbonate rocks revealed that they trend to silica, carbonate, and talc. Listwaenites are classified into two types: carbonate-rich listwaenites and silica–carbonate-rich listwaenites. Magnetite, chromite, galena, and gold are the most typical ores recorded in this research. Copyright © 2022 Abdel-Rahman, El-Desoky, Shalaby, Awad, Ene, Heikal, El-Awny, Fahmy, Taalab and Zakaly.The authors thank the “Dunarea de Jos” University of Galati, Romania, for the APC support. The researcher (HA) is funded by a scholarship under the Joint (Executive Program between Egypt and Russia)

Whole Exome Sequencing of Patients with Steroid-Resistant Nephrotic Syndrome

BACKGROUND AND OBJECTIVES: Steroid-resistant nephrotic syndrome overwhelmingly progresses to ESRD. More than 30 monogenic genes have been identified to cause steroid-resistant nephrotic syndrome. We previously detected causative mutations using targeted panel sequencing in 30% of patients with steroid-resistant nephrotic syndrome. Panel sequencing has a number of limitations when compared with whole exome sequencing. We employed whole exome sequencing to detect monogenic causes of steroid-resistant nephrotic syndrome in an international cohort of 300 families. DESIGN, SETTING, PARTIIPANTS AND MEASUREMENTS: Three hundred thirty-five individuals with steroid-resistant nephrotic syndrome from 300 families were recruited from April of 1998 to June of 2016. Age of onset was restricted to <25 years of age. Exome data were evaluated for 33 known monogenic steroid-resistant nephrotic syndrome genes. RESULTS: In 74 of 300 families (25%), we identified a causative mutation in one of 20 genes known to cause steroid-resistant nephrotic syndrome. In 11 families (3.7%), we detected a mutation in a gene that causes a phenocopy of steroid-resistant nephrotic syndrome. This is consistent with our previously published identification of mutations using a panel approach. We detected a causative mutation in a known steroid-resistant nephrotic syndrome gene in 38% of consanguineous families and in 13% of nonconsanguineous families, and 48% of children with congenital nephrotic syndrome. A total of 68 different mutations were detected in 20 of 33 steroid-resistant nephrotic syndrome genes. Fifteen of these mutations were novel. NPHS1, PLCE1, NPHS2, and SMARCAL1 were the most common genes in which we detected a mutation. In another 28% of families, we detected mutations in one or more candidate genes for steroid-resistant nephrotic syndrome. CONCLUSIONS: Whole exome sequencing is a sensitive approach toward diagnosis of monogenic causes of steroid-resistant nephrotic syndrome. A molecular genetic diagnosis of steroid-resistant nephrotic syndrome may have important consequences for the management of treatment and kidney transplantation in steroid-resistant nephrotic syndrome

A single-gene cause in 29.5% of cases of steroid-resistant nephrotic syndrome

Steroid-resistant nephrotic syndrome (SRNS) is the second most frequent cause of ESRD in the first two decades of life. Effective treatment is lacking. First insights into disease mechanisms came from identification of single-gene causes of SRNS. However, the frequency of single-gene causation and its age distribution in large cohorts are unknown. We performed exon sequencing of NPHS2 and WT1 for 1783 unrelated, international families with SRNS. We then examined all patients by microfluidic multiplex PCR and next-generation sequencing for all 27 genes known to cause SRNS if mutated. We detected a single-gene cause in 29.5% (526 of 1783) of families with SRNS that manifested before 25 years of age. The fraction of families in whom a single-gene cause was identified inversely correlated with age of onset. Within clinically relevant age groups, the fraction of families with detection of the single-gene cause was as follows: onset in the first 3 months of life (69.4%), between 4 and 12 months old (49.7%), between 1 and 6 years old (25.3%), between 7 and 12 years old (17.8%), and between 13 and 18 years old (10.8%). For PLCE1, specific mutations correlated with age of onset. Notably, 1% of individuals carried mutations in genes that function within the coenzyme Q10 biosynthesis pathway, suggesting that SRNS may be treatable in these individuals. Our study results should facilitate molecular genetic diagnostics of SRNS, etiologic classification for therapeutic studies, generation of genotype-phenotype correlations, and the identification of individuals in whom a targeted treatment for SRNS may be available

Approaches in biotechnological applications of natural polymers

Natural polymers, such as gums and mucilage, are biocompatible, cheap, easily available and non-toxic materials of native origin. These polymers are increasingly preferred over synthetic materials for industrial applications due to their intrinsic properties, as well as they are considered alternative sources of raw materials since they present characteristics of sustainability, biodegradability and biosafety. As definition, gums and mucilages are polysaccharides or complex carbohydrates consisting of one or more monosaccharides or their derivatives linked in bewildering variety of linkages and structures. Natural gums are considered polysaccharides naturally occurring in varieties of plant seeds and exudates, tree or shrub exudates, seaweed extracts, fungi, bacteria, and animal sources. Water-soluble gums, also known as hydrocolloids, are considered exudates and are pathological products; therefore, they do not form a part of cell wall. On the other hand, mucilages are part of cell and physiological products. It is important to highlight that gums represent the largest amounts of polymer materials derived from plants. Gums have enormously large and broad applications in both food and non-food industries, being commonly used as thickening, binding, emulsifying, suspending, stabilizing agents and matrices for drug release in pharmaceutical and cosmetic industries. In the food industry, their gelling properties and the ability to mold edible films and coatings are extensively studied. The use of gums depends on the intrinsic properties that they provide, often at costs below those of synthetic polymers. For upgrading the value of gums, they are being processed into various forms, including the most recent nanomaterials, for various biotechnological applications. Thus, the main natural polymers including galactomannans, cellulose, chitin, agar, carrageenan, alginate, cashew gum, pectin and starch, in addition to the current researches about them are reviewed in this article.. }To the Conselho Nacional de Desenvolvimento Cientfíico e Tecnológico (CNPq) for fellowships (LCBBC and MGCC) and the Coordenação de Aperfeiçoamento de Pessoal de Nvíel Superior (CAPES) (PBSA). This study was supported by the Portuguese Foundation for Science and Technology (FCT) under the scope of the strategic funding of UID/BIO/04469/2013 unit, the Project RECI/BBB-EBI/0179/2012 (FCOMP-01-0124-FEDER-027462) and COMPETE 2020 (POCI-01-0145-FEDER-006684) (JAT)