Entwicklung von Phytophthora-resistentem Zuchtmaterial für den ökologischen Landbau

Die Ansprüche des ökologischen Landbaus an Kartoffelsorten unterscheiden sich zum Teil erheblich von denen des konventionellen Anbaus. Dies ist bedingt durch den alternativen Pflanzenschutz mit mechanischer Unkrautbekämpfung sowie durch eine in der Regel geringere Stickstoffversorgung der Pflanzen. Darum benötigt der ökologische Landbau spezielle Sorten, die neben den vom Verbraucher gewünschten Qualitätsmerkmalen auch eine hohe Widerstandsfähigkeit gegenüber Krankheiten und Schädlingen besitzen, durch schnelle Jugendentwicklung das Unkrautwachstum unterdrücken und eine hohe Nährstoffeffizienz aufweisen. Um neue Zuchtstämme zu schaffen, in denen die im Biolandbau gewünschten Eigenschaften kombiniert vorliegen, etablierte das seit 2012 im „Bundesprogramm Ökologischer Landbau und andere Formen nachhaltiger Landwirtschaft“ geförderte Projekt „Entwicklung von Phytophthora-resistentem Zuchtmaterial für den ökologischen Landbau“ ein Zuchtprogramm speziell für den ökologischen Kartoffelanbau. Für die Züchtung auf geringe Anfälligkeit gegenüber der Kraut- und Knollenfäule, die durch den Oomyceten Phytophthora infestans hervorgerufen wird, wurde auf resistente Kartoffelklone aus der Vorzüchtung des Julius-Kühn Institutes zurückgegriffen. Die untersuchten Zuchtstämme und Vergleichssorten wurden parallel in einem Beobachtungsanbau hinsichtlich weiterer agronomischer und qualitativer Eigenschaften wie Ertragsleistung, Wuchsform, Stärkegehalt, Speise- und Veredelungseignung und Abreifeverhalten untersucht. Weitere Resistenzen sowie gewünschte Qualitätsmerkmale wurden aus modernen Hochleistungssorten deutscher Züchtungsunternehmen und historischen Sorten der IPK Genbank während des Projektverlaufs ins Zuchtmaterial eingebracht. Neben der Evaluierung der Prüfglieder hinsichtlich der Resistenzeigenschaften wurden zur Erweiterung des Basiszuchtmaterials zahlreiche Kreuzungen durchgeführt. Hierbei wurden die Kreuzungseltern gezielt aus den im Projekt geprüften Sorten und Zuchtstämmen ausgewählt. Für die Bewertung und die Selektion der Klone wurde ein partizipativer Züchtungsansatz gewählt und dafür drei ökologisch wirtschaftende, landwirtschaftliche Betriebe ins Projekt eingebunden. Die Betriebsleiter wurden intensiv geschult und führten die Bewertung der Klone und die Selektion der Knollen in enger Zusammenarbeit mit den wissenschaftlichen Mitarbeitern der Institute durch. Ein solches Modell ist bislang in der der deutschen Kartoffelzüchtung einzigartig. Wissenschaftlich begleitet wurden die Züchtungsarbeiten durch eine phänotypische und genotypische Charakterisierung des Ausgangsmaterials und der Zuchtklone. Ziel hierbei war es, Grundlagen für eine molekulare Selektion KF-resistenter Nachkommen zu schaffen. Hierzu wurden an einem Prüfgliedsortiment Assoziationsstudien mit DArT- und SNP-Markern durchgeführt und ausgewertet. Im Projekt wurden am IPK erstmalig zwei Sortimente umfassend genetisch mittels zwei verschiedener Markersysteme zu charakterisiert. Mit den erzielten Ergebnisse konnten Duplikatgruppen innerhalb der Genbankakzessionen aufgedeckt sowie Unstimmigkeiten erkannt und bereinigt werden. Damit wurde das Genbankmanagement verbessert und nutzerorientiert gestaltet. Somit hat das Projekt eine nachhaltigere und intensivere Nutzung pflanzengenetischer Ressourcen ermöglicht. Dadurch ist es Züchtern wie auch Forschungsinstitutionen zukünftig möglich, zielgerichteter auf genetische Ressourcen der Kartoffel zuzugreifen und diese in die eigenen Zuchtprogramme und Forschungsprojekte einzubringen

High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (Lolium perenne L.)

The natural genetic diversity of agricultural species is an essential genetic resource for breeding programs aiming to improve their ecosystem and production services. A large natural ecotype diversity is usually available for most grassland species. This could be used to recombine natural climatic adaptations and agronomic value to create improved populations of grassland species adapted to future regional climates. However describing natural genetic resources can be long and costly. Molecular markers may provide useful information to help this task. This opportunity was investigated for Lolium perenne L., using a set of 385 accessions from the natural diversity of this species collected right across Europe and provided by genebanks of several countries. For each of these populations, genotyping provided the allele frequencies of 189,781 SNP markers. GWAS were implemented for over 30 agronomic and/or putatively adaptive traits recorded in three climatically contrasted locations (France, Belgium, Germany). Significant associations were detected for hundreds of markers despite a strong confounding effect of the genetic background; most of them pertained to phenology traits. It is likely that genetic variability in these traits has had an important contribution to environmental adaptation and ecotype differentiation. Genomic prediction models calibrated using natural diversity were found to be highly effective to describe natural populations for almost all traits as well as commercial synthetic populations for some important traits such as disease resistance, spring growth or phenological traits. These results will certainly be valuable information to help the use of natural genetic resources of other species

Pleistocene climate changes, and not agricultural spread, accounts for range expansion and admixture in the dominant grassland species <i>Lolium perenne</i> L.

International audienceAim: Grasslands have been pivotal in the development of herbivore breeding since the Neolithic and still represent the most widespread agricultural land use across Europe. However, it remains unclear whether the current large‐scale genetic variation of plant species found in natural grasslands of Europe is the result of human activities or natural processes. Location: Europe. Taxon: Lolium perenne L. (perennial ryegrass). Methods: We reconstructed the phylogeographic history of L. perenne, a dominant grassland species, using 481 natural populations, including 11 populations of closely related taxa. We combined Genotyping‐by‐Sequencing (GBS) and pool‐Sequencing (pool‐Seq) to obtain high‐quality allele frequency calls of ~500 k SNP loci. We performed genetic structure analyses and demographic reconstructions based on the site frequency spectrum (SFS). We additionally used the same genotyping protocol to assess the genomic diversity of a set of 32 cultivars representative of the L. perenne cultivars widely used for forage purposes. Results: Expansion across Europe took place during the Würm glaciation (12–110 kya), a cooling period that decreased the dominance of trees in favour of grasses. Splits and admixtures in L. perenne fit historical climate changes in the Mediterranean basin. The development of agriculture in Europe (7–3.5 kya), that caused an increase in the abundance of grasslands, did not have an effect on the demographic patterns of L. perenne. We found that most modern cultivars are closely related to natural diversity from north-western Europe. Thus, modern cultivars do not represent the wide genetic variation found in natural populations. Main conclusions: Demographic events in L. perenne can be explained by the changing climatic conditions during the Pleistocene. Natural populations maintain a wide genomic variability at continental scale that has been minimally exploited by recent breeding activities. This variability constitutes valuable standing genetic variation for future adaptation of grasslands to climate change, safeguarding the agricultural services they provide

Canonical correlations reveal adaptive loci and phenotypic responses to climate in perennial ryegrass

Germplasm from perennial ryegrass (Lolium perenne L.) natural populations is useful for breeding because of its adaptation to a wide range of climates. Climate‐adaptive genes can be detected from associations between genotype, phenotype and climate but an integrated framework for the analysis of these three sources of information is lacking. We used two approaches to identify adaptive loci in perennial ryegrass and their effect on phenotypic traits. First, we combined Genome‐Environment Association (GEA) and GWAS analyses. Then, we implemented a new test based on a Canonical Correlation Analysis (CANCOR) to detect adaptive loci. Furthermore, we improved the previous perennial ryegrass gene set by de novo gene prediction and functional annotation of 39,967 genes. GEA‐GWAS revealed eight outlier loci associated with both environmental variables and phenotypic traits. CANCOR retrieved 633 outlier loci associated with two climatic gradients, characterized by cold‐dry winter versus mild‐wet winter and long rainy season versus long summer, and pointed out traits putatively conferring adaptation at the extremes of these gradients. Our CANCOR test also revealed the presence of both polygenic and oligogenic climatic adaptations. Our gene annotation revealed that 374 of the CANCOR outlier loci were positioned within or close to a gene. Co‐association networks of outlier loci revealed a potential utility of CANCOR for investigating the interaction of genes involved in polygenic adaptations. The CANCOR test provides an integrated framework to analyse adaptive genomic diversity and phenotypic responses to environmental selection pressures that could be used to facilitate the adaptation of plant species to climate change

Evaluation of Wild Potato Germplasm for Tuber Starch Content and Nitrogen Utilization Efficiency

Potato wild relatives provide a considerable source of variation for important traits in cultivated potato (Solanum tuberosum L.) breeding. This study evaluates the variation of tuber starch content and nitrogen utilization efficiency (NutE) in wild potato germplasm. For the experiments regarding starch content, 28 accessions of ten different tuber-bearing wild Solanum-species were chosen, and in vitro plantlets were raised from seeds. Twenty plantlets (= genotypes) per accession were then cultivated in the greenhouse until natural senescence and tuber starch content was determined. The average tuber starch content across all genotypes tested was 21.7% of fresh mass. Contents above 28% of fresh mass were found in 50 genotypes, belonging to the species S. chacoense, S. commersonii, S. jamesii, and S. pinnatisectum. Subsequently, 22 wild genotypes revealing high tuber starch contents and four modern varieties of cultivated potato were studied as in vitro plantlets under optimal and low N supply (30 and 7.5 mmol L&minus;1 N). Low N supply lead to a genotype-dependent reduction of shoot dry mass between 13 and 46%. The majority of the wild types also reduced root dry mass by 26 to 62%, while others maintained root growth and even exceeded the NutE of the varieties under low N supply. Thus, wild potato germplasm appears superior to cultivars in terms of tuber starch contents and N utilization efficiency, which should be investigated in further studies

Evaluation of Wild Potato Germplasm for Tuber Starch Content and Nitrogen Utilization Efficiency

Potato wild relatives provide a considerable source of variation for important traits in cultivated potato (Solanum tuberosum L.) breeding. This study evaluates the variation of tuber starch content and nitrogen utilization efficiency (NutE) in wild potato germplasm. For the experiments regarding starch content, 28 accessions of ten different tuber-bearing wild Solanum-species were chosen, and in vitro plantlets were raised from seeds. Twenty plantlets (= genotypes) per accession were then cultivated in the greenhouse until natural senescence and tuber starch content was determined. The average tuber starch content across all genotypes tested was 21.7% of fresh mass. Contents above 28% of fresh mass were found in 50 genotypes, belonging to the species S. chacoense, S. commersonii, S. jamesii, and S. pinnatisectum. Subsequently, 22 wild genotypes revealing high tuber starch contents and four modern varieties of cultivated potato were studied as in vitro plantlets under optimal and low N supply (30 and 7.5 mmol L−1 N). Low N supply lead to a genotype-dependent reduction of shoot dry mass between 13 and 46%. The majority of the wild types also reduced root dry mass by 26 to 62%, while others maintained root growth and even exceeded the NutE of the varieties under low N supply. Thus, wild potato germplasm appears superior to cultivars in terms of tuber starch contents and N utilization efficiency, which should be investigated in further studies

Specific and intraspecific P efficiency of small-grain legumes as affected by long-term P management

Legumes have a high demand for phosphorus (P) but also have effective physiological and morphological strategies of P mobilisation. In order to evaluate the inter- and intraspecific P efficiency of small-grain legumes under contrasting long-term P management, eight accessions each of alfalfa (Medicago sativa L.) and red clover (Trifolium pratense L.) were cultivated in two consecutive growing periods from 2020 to 2021 in a field trial established in 1998. Six treatments (no P, triple-superphosphate (TSP), biomass ash, cattle manure, biowaste compost, and biowaste compost + TSP) were considered as P sources. While the yield clearly varied between both growing seasons, the differences between alfalfa and red clover were relatively small (4.7 vs. 4.9 Mg ha(-1) in 2020 and 12.0 vs. 10.5 Mg ha(-1) in 2021, p &lt; 0.05). Even after more than 20 years of P management, crop yields were hardly affected by mineral P sources (TSP and biomass ash) while organic fertilisers increased the yields and nutrient uptake of plants and also raised soil P pools and the activities of soil enzymes in comparison to the control. A relevant crop effect was only found for the nitrogen (N) leaching with higher mineral N contents in 60 to 90 cm soil depth measured for red clover compared to alfalfa (11.8 vs. 4.8 kg ha(-1), p &lt; 0.05). Our results emphasise the high P efficiency of small-grain legumes without pronounced inter- or intraspecific differences. The yield-enhancing effect of organic amendments was related to higher soil fertility rather than to P supply

Bridging landscape genomics and quantitative genetics for a regional adaptation of European grasslands to climate-change

National audienc

Mixed Growth with Weeds Promotes Mycorrhizal Colonization and Increases the Plant-Availability of Phosphorus under Maize (<i>Zea mays</i> L.)

(1) Background: Weed control decreases the competition for nutrients, but also the potential of increased phosphorus (P) mobilization in soils caused by higher plant diversity. (2) Methods: Impacts of weed species under maize on mycorrhizal colonization and plant-availability of P were investigated in two pot experiments. Plant traits and P mobilization were tested in weed-free maize and in mixed growth with six annual weed species. (3) Results: Growth of maize decreased in treatments with weeds, while P concentrations in its shoots increased in mixed growth with C. album, E. crus-galli and P. convolvulus. Mycorrhizal colonization of maize without weeds was low (C. album, E. crus-galli and V. arvensis up to 40%. The activities of Pmobilizing hydrolytic enzymes (phosphatases, ß-glucosidase) and plant-availability of P were occasionally higher under mixed growth with weeds. The dimension of weed impacts on P cycling under maize differed significantly between both experiments. (4) Conclusions: Weeds potentially promote P mobilization and mycorrhizal colonization under maize, but this impact is not guaranteed. The weed-based improved P supply of maize should be defined under field conditions to allow a controlled weed tolerance in maize cropping systems