Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets-3

<p><b>Copyright information:</b></p><p>Taken from "Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets"</p><p>http://www.biomedcentral.com/1471-2164/8/439</p><p>BMC Genomics 2007;8():439-439.</p><p>Published online 28 Nov 2007</p><p>PMCID:PMC2216037.</p><p></p>lts return Ensembl Gene ID by default with a hyper-link to the Ensembl GeneView website. In the Gene DAS Report section, which can be expanded/collapsed using the "+/-" box, a list of all the DAS sources including the Pancreatic Expression database is provided. To display the Pancreatic Expression database annotations, one can simply click on the checkbox next to the Pancreatic Expression and press the Update button at the end of the DAS sources

Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets-4

<p><b>Copyright information:</b></p><p>Taken from "Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets"</p><p>http://www.biomedcentral.com/1471-2164/8/439</p><p>BMC Genomics 2007;8():439-439.</p><p>Published online 28 Nov 2007</p><p>PMCID:PMC2216037.</p><p></p>s and present in plasma. 1. Filter: the query is restricted by clicking on the "" node on the left, expanding the filter section "" and selecting for genes differentially expressed in ")" as well as ")" and expanding the filter section "" and selecting for genes expressed in "". 2. Attributes: selected by clicking on the "" node on the left, choosing the "" attribute page, expanding the attribute section "" to remove ", "" and "" default options, expanding the attribute section "" and selecting "" under "". 3. Results: Clicking the "" button in the tool bar returns 37 genes satisfying the filters criteria. Clicking the "" button on the toolbar will retrieve a result table. Checking the "Unique results only" will display only the unique rows of the result table

Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets-13

<p><b>Copyright information:</b></p><p>Taken from "Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets"</p><p>http://www.biomedcentral.com/1471-2164/8/439</p><p>BMC Genomics 2007;8():439-439.</p><p>Published online 28 Nov 2007</p><p>PMCID:PMC2216037.</p><p></p>Access within the open source R statistical environment through the biomaRt bioconductor package. C – Access from Taverna workflow system. D – Access with Galaxy

Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets-10

<p><b>Copyright information:</b></p><p>Taken from "Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets"</p><p>http://www.biomedcentral.com/1471-2164/8/439</p><p>BMC Genomics 2007;8():439-439.</p><p>Published online 28 Nov 2007</p><p>PMCID:PMC2216037.</p><p></p>ally regulated in neuroendocrine tumours (PEN). 1. Filter: one can restrict the query by clicking on the "" node on the left, expanding the filter section "" to restricted the query for genes differentially expressed in "". Next, one can expand the filter section "" and restrict the query further to genes having expression profiles in pancreas and tumour by selecting. "" for "" () and the "" for "" (). 2. Attributes: one can click on the "" node on the left and start choosing attributes on the right. In this example, one can choose the "" attribute page, expand the attribute section "" to remove "" and "" options selected by default, expand the attribute section "" and select the "" under the ". 3. Results: one can preview the results by clicking the Results button on the toolbar

Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets-5

<p><b>Copyright information:</b></p><p>Taken from "Pancreatic Expression database: a generic model for the organization, integration and mining of complex cancer datasets"</p><p>http://www.biomedcentral.com/1471-2164/8/439</p><p>BMC Genomics 2007;8():439-439.</p><p>Published online 28 Nov 2007</p><p>PMCID:PMC2216037.</p><p></p>intraepithelial neoplasias and pancreatic adenocarcinoma) and to retrieve the genes found to be de-regulated in the progression of pancreatic cancer. 1. Filter: one can choose ")", ")" and "e)" from the filter section "". 2. Attributes: one can choose the "" attribute page, expand the attribute section "" to remove ", "" and "" default options, expand the attribute section "" and select "" under "". 3. Results: Clicking the "" button in the tool bar returns 10 genes involved in the progression of pancreatic cancer