A comprehensive deep learning-based approach to reduced order modeling of nonlinear time-dependent parametrized PDEs

Traditional reduced order modeling techniques such as the reduced basis (RB) method (relying, e.g., on proper orthogonal decomposition (POD)) suffer from severe limitations when dealing with nonlinear time-dependent parametrized PDEs, because of the fundamental assumption of linear superimposition of modes they are based on. For this reason, in the case of problems featuring coherent structures that propagate over time such as transport, wave, or convection-dominated phenomena, the RB method usually yields inefficient reduced order models (ROMs) if one aims at obtaining reduced order approximations sufficiently accurate compared to the high-fidelity, full order model (FOM) solution. To overcome these limitations, in this work, we propose a new nonlinear approach to set reduced order models by exploiting deep learning (DL) algorithms. In the resulting nonlinear ROM, which we refer to as DL-ROM, both the nonlinear trial manifold (corresponding to the set of basis functions in a linear ROM) as well as the nonlinear reduced dynamics (corresponding to the projection stage in a linear ROM) are learned in a non-intrusive way by relying on DL algorithms; the latter are trained on a set of FOM solutions obtained for different parameter values. In this paper, we show how to construct a DL-ROM for both linear and nonlinear time-dependent parametrized PDEs; moreover, we assess its accuracy on test cases featuring different parametrized PDE problems. Numerical results indicate that DL-ROMs whose dimension is equal to the intrinsic dimensionality of the PDE solutions manifold are able to approximate the solution of parametrized PDEs in situations where a huge number of POD modes would be necessary to achieve the same degree of accuracy.Comment: 28 page

A Deep Learning algorithm to accelerate Algebraic Multigrid methods in Finite Element solvers of 3D elliptic PDEs

Algebraic multigrid (AMG) methods are among the most efficient solvers for linear systems of equations and they are widely used for the solution of problems stemming from the discretization of Partial Differential Equations (PDEs). The most severe limitation of AMG methods is the dependence on parameters that require to be fine-tuned. In particular, the strong threshold parameter is the most relevant since it stands at the basis of the construction of successively coarser grids needed by the AMG methods. We introduce a novel Deep Learning algorithm that minimizes the computational cost of the AMG method when used as a finite element solver. We show that our algorithm requires minimal changes to any existing code. The proposed Artificial Neural Network (ANN) tunes the value of the strong threshold parameter by interpreting the sparse matrix of the linear system as a black-and-white image and exploiting a pooling operator to transform it into a small multi-channel image. We experimentally prove that the pooling successfully reduces the computational cost of processing a large sparse matrix and preserves the features needed for the regression task at hand. We train the proposed algorithm on a large dataset containing problems with a highly heterogeneous diffusion coefficient defined in different three-dimensional geometries and discretized with unstructured grids and linear elasticity problems with a highly heterogeneous Young's modulus. When tested on problems with coefficients or geometries not present in the training dataset, our approach reduces the computational time by up to 30%

Accelerating Algebraic Multigrid Methods via Artificial Neural Networks

We present a novel deep learning-based algorithm to accelerate—through the use of Arti- ficial Neural Networks (ANNs)—the convergence of Algebraic Multigrid (AMG) methods for the iterative solution of the linear systems of equations stemming from finite element discretizations of Partial Differential Equations (PDE). We show that ANNs can be success- fully used to predict the strong connection parameter that enters in the construction of the sequence of increasingly smaller matrix problems standing at the basis of the AMG algo- rithm, so as to maximize the corresponding convergence factor of the AMG scheme. To demonstrate the practical capabilities of the proposed algorithm, which we call AMG-ANN, we consider the iterative solution of the algebraic system of equations stemming from finite element discretizations of two-dimensional model problems. First, we consider an ellip- tic equation with a highly heterogeneous diffusion coefficient and then a stationary Stokes problem. We train (off-line) our ANN with a rich dataset and present an in-depth analy- sis of the effects of tuning the strong threshold parameter on the convergence factor of the resulting AMG iterative scheme

Preserving the positivity of the deformation gradient determinant in intergrid interpolation by combining RBFs and SVD: application to cardiac electromechanics

The accurate robust and efficient transfer of the deformation gradient tensor between meshes of different resolution is crucial in cardiac electromechanics simulations. We present a novel method that combines rescaled localized Radial Basis Function (RBF) interpolation with Singular Value Decomposition (SVD) to preserve the positivity of the determinant of the deformation gradient tensor. The method involves decomposing the evaluations of the tensor at the quadrature nodes of the source mesh into rotation matrices and diagonal matrices of singular values; computing the RBF interpolation of the quaternion representation of rotation matrices and the singular value logarithms; reassembling the deformation gradient tensors at quadrature nodes of the destination mesh, to be used in the assembly of the electrophysiology model equations. The proposed method overcomes limitations of existing interpolation methods, including nested intergrid interpolation and RBF interpolation of the displacement field, that may lead to the loss of physical meaningfulness of the mathematical formulation and then to solver failures at the algebraic level, due to negative determinant values. The proposed method enables the transfer of solution variables between finite element spaces of different degrees and shapes and without stringent conformity requirements between different meshes, enhancing the flexibility and accuracy of electromechanical simulations. Numerical results confirm that the proposed method enables the transfer of the deformation gradient tensor, allowing to successfully run simulations in cases where existing methods fail. This work provides an efficient and robust method for the intergrid transfer of the deformation gradient tensor, enabling independent tailoring of mesh discretizations to the particular characteristics of the physical components concurring to the of the multiphysics model.Comment: 24 pages; 11 figure

Hemodynamics of the heart's left atrium based on a Variational Multiscale-LES numerical model

In this paper, we investigate the hemodynamics of a left atrium (LA) by proposing a computational model suitable to provide physically meaningful fluid dynamics indications and detailed blood flow characterization. In particular, we consider the incompressible Navier-Stokes equations in Arbitrary Lagrangian Eulerian (ALE) formulation to deal with the LA domain under prescribed motion. A Variational Multiscale (VMS) method is adopted to obtain a stable formulation of the Navier-Stokes equations discretized by means of the Finite Element method and to account for turbulence modeling based on Large Eddy Simulation (LES). The aim of this paper is twofold: on one hand to improve the general understanding of blood flow in the human LA in normal conditions; on the other, to analyse the effects of the turbulence VMS-LES method on a situation of blood flow which is neither laminar, nor fully turbulent, but rather transitional as in LA. Our results suggest that if relatively coarse meshes are adopted, the additional stabilization terms introduced by the VMS-LES method allow to better predict transitional effects and cycle-to-cycle blood flow variations than the standard SUPG stabilization method

Numerical Modelling of the Brain Poromechanics by High-Order Discontinuous Galerkin Methods

We introduce and analyze a discontinuous Galerkin method for the numerical modelling of the equations of Multiple-Network Poroelastic Theory (MPET) in the dynamic formulation. The MPET model can comprehensively describe functional changes in the brain considering multiple scales of fluids. Concerning the spatial discretization, we employ a high-order discontinuous Galerkin method on polygonal and polyhedral grids and we derive stability and a priori error estimates. The temporal discretization is based on a coupling between a Newmark $\beta$-method for the momentum equation and a $\theta$-method for the pressure equations. After the presentation of some verification numerical tests, we perform a convergence analysis using an agglomerated mesh of a geometry of a brain slice. Finally we present a simulation in a three dimensional patient-specific brain reconstructed from magnetic resonance images. The model presented in this paper can be regarded as a preliminary attempt to model the perfusion in the brain

Modeling isovolumetric phases in cardiac flows by an Augmented Resistive Immersed Implicit Surface method

A major challenge in the computational fluid dynamics modeling of the heart function is the simulation of isovolumetric phases when the hemodynamics problem is driven by a prescribed boundary displacement. During such phases, both atrioventricular and semilunar valves are closed: consequently, the ventricular pressure may not be uniquely defined, and spurious oscillations may arise in numerical simulations. These oscillations can strongly affect valve dynamics models driven by the blood flow, making unlikely to recovering physiological dynamics. Hence, prescribed opening and closing times are usually employed, or the isovolumetric phases are neglected altogether. In this article, we propose a suitable modification of the Resistive Immersed Implicit Surface (RIIS) method (Fedele et al., Biomech Model Mechanobiol 2017, 16, 1779-1803) by introducing a reaction term to correctly capture the pressure transients during isovolumetric phases. The method, that we call Augmented RIIS (ARIIS) method, extends the previously proposed ARIS method (This et al., Int J Numer Methods Biomed Eng 2020, 36, e3223) to the case of a mesh which is not body-fitted to the valves. We test the proposed method on two different benchmark problems, including a new simplified problem that retains all the characteristics of a heart cycle. We apply the ARIIS method to a fluid dynamics simulation of a realistic left heart geometry, and we show that ARIIS allows to correctly simulate isovolumetric phases, differently from standard RIIS method. Finally, we demonstrate that by the new method the cardiac valves can open and close without prescribing any opening/closing times