3 research outputs found
Isoform-Selective ATAD2 Chemical Probe with Novel Chemical Structure and Unusual Mode of Action
ATAD2
(ANCCA) is an epigenetic regulator and transcriptional cofactor,
whose overexpression has been linked to the progress of various cancer
types. Here, we report a DNA-encoded library screen leading to the
discovery of BAY-850, a potent and isoform selective inhibitor that
specifically induces ATAD2 bromodomain dimerization and prevents interactions
with acetylated histones <i>in vitro</i>, as well as with
chromatin in cells. These features qualify BAY-850 as a chemical probe
to explore ATAD2 biology
Structure Based Design of Non-Natural Peptidic Macrocyclic Mcl‑1 Inhibitors
Mcl-1 is a pro-apoptotic
BH3 protein family member similar to Bcl-2
and Bcl-xL. Overexpression of Mcl-1 is often seen in various tumors
and allows cancer cells to evade apoptosis. Here we report the discovery
and optimization of a series of non-natural peptide Mcl-1 inhibitors.
Screening of DNA-encoded libraries resulted in hit compound <b>1</b>, a 1.5 μM Mcl-1 inhibitor. A subsequent crystal structure
demonstrated that compound <b>1</b> bound to Mcl-1 in a β-turn
conformation, such that the two ends of the peptide were close together.
This proximity allowed for the linking of the two ends of the peptide
to form a macrocycle. Macrocyclization resulted in an approximately
10-fold improvement in binding potency. Further exploration of a key
hydrophobic interaction with Mcl-1 protein and also with the moiety
that engages Arg256 led to additional potency improvements. The use
of protein–ligand crystal structures and binding kinetics contributed
to the design and understanding of the potency gains. Optimized compound <b>26</b> is a <3 nM Mcl-1 inhibitor, while inhibiting Bcl-2 at
only 5 μM and Bcl-xL at >99 μM, and induces cleaved
caspase-3
in MV4–11 cells with an IC<sub>50</sub> of 3 μM after
6 h
Structure Based Design of Non-Natural Peptidic Macrocyclic Mcl‑1 Inhibitors
Mcl-1 is a pro-apoptotic
BH3 protein family member similar to Bcl-2
and Bcl-xL. Overexpression of Mcl-1 is often seen in various tumors
and allows cancer cells to evade apoptosis. Here we report the discovery
and optimization of a series of non-natural peptide Mcl-1 inhibitors.
Screening of DNA-encoded libraries resulted in hit compound <b>1</b>, a 1.5 μM Mcl-1 inhibitor. A subsequent crystal structure
demonstrated that compound <b>1</b> bound to Mcl-1 in a β-turn
conformation, such that the two ends of the peptide were close together.
This proximity allowed for the linking of the two ends of the peptide
to form a macrocycle. Macrocyclization resulted in an approximately
10-fold improvement in binding potency. Further exploration of a key
hydrophobic interaction with Mcl-1 protein and also with the moiety
that engages Arg256 led to additional potency improvements. The use
of protein–ligand crystal structures and binding kinetics contributed
to the design and understanding of the potency gains. Optimized compound <b>26</b> is a <3 nM Mcl-1 inhibitor, while inhibiting Bcl-2 at
only 5 μM and Bcl-xL at >99 μM, and induces cleaved
caspase-3
in MV4–11 cells with an IC<sub>50</sub> of 3 μM after
6 h