DINeR: Database for Insect Neuropeptide Research

Neuropeptides are responsible for regulating a variety of functions, including development, metabolism, water and ion homeostasis, and as neuromodulators in circuits of the central nervous system. Numerous neuropeptides have been identified and characterized. However, both discovery and functional characterization of neuropeptides across the massive Class Insecta has been sporadic. To leverage advances in post-genomic technologies for this rapidly growing field, insect neuroendocrinology requires a consolidated, comprehensive and standardised resource for managing neuropeptide information. The Database for Insect Neuropeptide Research (DINeR) is a web-based database-application used for search and retrieval of neuropeptide information of various insect species detailing their isoform sequences, physiological functionality and images of their receptor-binding sites, in an intuitive, accessible and user-friendly format. The curated data includes representatives of 50 well described neuropeptide families from over 400 different insect species. Approximately 4700 FASTA formatted, neuropeptide isoform amino acid sequences and over 200 records of physiological functionality have been recorded based on published literature. Also available are images of neuropeptide receptor locations. In addition, the data include comprehensive summaries for each neuropeptide family, including their function, location, known functionality, as well as cladograms, sequence alignments and logos covering most insect orders. Moreover, we have adopted a standardized nomenclature to address inconsistent classification of neuropeptides

Coordinated RNA-Seq and peptidomics identify neuropeptides and G-protein coupled receptors (GPCRs) in the large pine weevil Hylobius abietis, a major forestry pest

Hylobius abietis (Linnaeus), or large pine weevil (Coleoptera, Curculionidae), is a pest of European coniferous forests. In order to gain understanding of the functional physiology of this species, we have assembled a de novo transcriptome of H. abietis, from sequence data obtained by Next Generation Sequencing. In particular, we have identified genes encoding neuropeptides, peptide hormones and their putative G-protein coupled receptors (GPCRs) to gain insights into neuropeptide-modulated processes. The transcriptome was assembled de novo from pooled paired-end, sequence reads obtained from RNA from whole adults, gut and central nervous system tissue samples. Data analysis was performed on the transcripts obtained from the assembly including, annotation, gene ontology and functional assignment as well as transcriptome completeness assessment and KEGG pathway analysis. Pipelines were created using Bioinformatics tools and techniques for prediction and identification of neuropeptides and neuropeptide receptors. Peptidomic analysis was also carried out using a combination of MALDI-TOF as well as Q-Exactive Orbitrap mass spectrometry to confirm the identified neuropeptide. 41 putative neuropeptide families were identified in H. abietis, including Adipokinetic hormone (AKH), CAPA and DH31. Neuropeptide F, which has not been yet identified in the model beetle T. castaneum, was identified. Additionally, 24 putative neuropeptide and 9 leucine-rich repeat containing G protein coupled receptor-encoding transcripts were determined using both alignment as well as non-alignment methods. This information, submitted to the NCBI sequence read archive repository (SRA accession: SRP133355), can now be used to inform understanding of neuropeptide-modulated physiology and behaviour in H. abietis; and to develop specific neuropeptide-based tools for H. abietis control

Risk of intracerebral aneurysm rupture during carotid revascularization

ObjectiveRobust guidelines exist for the treatment of carotid stenosis and intracranial aneurysms independently, however, the management of tandem carotid stenosis and intracranial aneurysms remains uncertain. Although the prevalence of tandem pathologies is small (1.9%-3.2%), treating carotid stenosis can alter intracranial hemodynamics potentially predisposing to aneurysm rupture. In this review, our aim was to assess the safety of intervention in this cohort, by analyzing outcomes from the published literature.MethodsThe preferred reporting items for systematic reviews and meta-analyses (PRISMA) guidelines were used to conduct the review. Articles from 1947 to 2012 were searched using EMBASE Classic and EMBASE (November, 1947 -March, 2012) and Ovid MEDLINE(R) In-Process and other NonIndexed Citations and Ovid MEDLINE(R) on Ovid SP, http://ClinicalTrials.gov, http://controlled-trials.com and the Cochrane review database using a predefined search strategy.ResultsOne hundred forty-one patients from 27 articles were included. Interventions ranged from single (n = 104, 74%), staged (n = 26, 18%) to simultaneous procedures (n = 11, 8%). The largest cohort of patients was treated by carotid endarterectomy alone (n = 92, 66%). The majority of patients presented with a symptomatic carotid stenosis and an asymptomatic ipsilateral intracranial aneurysm (n = 70, 50%). Five subarachnoid hemorrhages occurred (4% [5/140], three within 30 days of the procedure and two thereafter) of which two were fatal. All five occurred in patients who underwent carotid endarterectomy as a single procedure (5%). Two of the five patients presented with ruptured posterior communicating artery aneurysms.ConclusionsPublished reports of perioperative aneurysm rupture are rare in individuals with tandem carotid stenosis and intracranial aneurysms. This is the first analysis of all published cases. However, it is limited by the small number of studies and the possible underreporting due to publication bias and underdiagnosis where angiography was not performed. Although we report a low incidence of subarachnoid hemorrhage, analysis of registry data with a larger cohort is warranted to confirm these findings

GENDER DIFFERENCES IN THE RELATIONSHIP BETWEEN QUADRICEPS MVIC AND HAMSTRING TO QUADRICEPS RATIO

No previous research has evaluated the relationship between degree of Q activation and its’ effect on H:Q ratio, despite the fact that Q dominance and low H:Q ratios are thought to increase the risk of H and ACL injury (Baratta et al., 1988; Hewitt et al., 2001). Compared to males, females may be at greater risk, due to higher Q co-activation (Colliander and Tesch, 1989; White et al., 2003). The purpose of this study was to evaluate gender differences in the relationship between Q activation and it’s effect on H:Q ratios

The Approximating Hamiltonian Method for the Imperfect Boson Gas

The pressure for the Imperfect (Mean Field) Boson gas can be derived in several ways. The aim of the present note is to provide a new method based on the Approximating Hamiltonian argument which is extremely simple and very general.Comment: 7 page

Innate immunity and monocyte-macrophage activation in atherosclerosis

Innate inflammation is a hallmark of both experimental and human atherosclerosis. The predominant innate immune cell in the atherosclerotic plaque is the monocyte-macrophage. The behaviour of this cell type within the plaque is heterogeneous and depends on the recruitment of diverse monocyte subsets. Furthermore, the plaque microenvironment offers polarisation and activation signals which impact on phenotype. Microenvironmental signals are sensed through pattern recognition receptors, including toll-like and NOD-like receptors - the latter of which are components of the inflammasome - thus dictating macrophage behaviour and outcome in atherosclerosis. Recently cholesterol crystals and modified lipoproteins have been recognised as able to directly engage these pattern recognition receptors. The convergent role of such pathways in terms of macrophage activation is discussed in this review

Metastatic prostate cancer masquerading clinically and radiologically as a primary caecal carcinoma

BACKGROUND: Prostatic carcinoma is the second most common cause of cancer-related deaths in males in the West. Approximately 20% of patients present with metastatic disease. We describe the case of a patient with metastatic prostate cancer to the bowel presenting clinically and radiologically as a primary caecal cancer. CASE PRESENTATION: A 72 year-old man presented with abdominal discomfort and a clinically palpable caecal mass and a firm nodule on his thigh, the latter behaving clinically and radiologically as a lipoma. Computed tomographic (CT) scan showed a luminally protuberant caecal mass with regional nodal involvement. The patient was being treated (Zoladex(®)) for prostatic cancer diagnosed 6 years previously and was known to have bony metastases. On admission his PSA was 245.4 nmol/ml. The patient underwent a right hemicolectomy. Histology showed a poorly differentiated adenocarcinoma which was PSA positive, confirming metastatic prostatic adenocarcinoma to the caecum. The patient underwent adjuvant chemotherapy and is free from recurrence a year later. CONCLUSION: Metastasis of prostatic carcinoma to the bowel is a very rare occurrence and presents a challenging diagnosis. The diagnosis is supported by immunohistochemistry for PSA. The treatment for metastatic prostate cancer is mainly palliative

The Flatness and Sudden Evolution of the Intergalactic Ionizing Background

The ionizing background of cosmic hydrogen is an important probe of the sources and absorbers of ionizing radiation in the post-reionization universe. Previous studies show that the ionization rate should be very sensitive to changes in the source population: as the emissivity rises, absorbers shrink in size, increasing the ionizing mean free path and, hence, the ionizing background. By contrast, observations of the ionizing background find a very flat evolution from z~2-5, before falling precipitously at z~6. We resolve this puzzling discrepancy by pointing out that, at z~2-5, optically thick absorbers are associated with the same collapsed halos that host ionizing sources. Thus, an increasing abundance of galaxies is compensated for by a corresponding increase in the absorber population, which moderates the instability in the ionizing background. However, by z~5-6, gas outside of halos dominates the absorption, the coupling between sources and absorbers is lost, and the ionizing background evolves rapidly. Our halo based model reproduces observations of the ionizing background, its flatness and sudden decline, as well as the redshift evolution of the ionizing mean free path. Our work suggests that, through much of their history, both star formation and photoelectric opacity in the universe track halo growth.Comment: 16 pages, 7 figures, submitted to MNRAS, revised methods leading to same but more convincing conclusion

ELECTROMYOGRAPHICAL ANALYSIS OF HAMSTRING RESISTANCE TRAINING EXERCISES

This study evaluated the EMG activity of the hamstring and quadriceps muscle groups during resistance training exercises commonly used for training the hamstrings. Subjects included 34 collegiate athletes. Hamstring and quadriceps MVIC and 6 repetition maximum loads were determined. Data were collected 72 hours later, during the performance of 6 randomly ordered exercises, including back squats, seated leg curls, stiff leg dead lifts, single leg dead lifts, good mornings, and “Russian curls.” Data were analyzed using RMS values normalized to MVIC. A one way repeated measures ANOVA revealed that significant differences existed between several exercises. Additionally, the ratio of hamstring to quadriceps co-activation was significantly different between all exercises