Heterozygosities in Kenyan village, European and Survivor dogs.

<p>Heterozygosities in Kenyan village, European and Survivor dogs.</p

Pairwise FST values and Nm values in Kenyan village and European dogs based on microsatellite, SNPs and MHC markers.

<p>Pairwise FST values and Nm values in Kenyan village and European dogs based on microsatellite, SNPs and MHC markers.</p

Immunity-related SNP markers.

<p>Immunity-related SNP markers.</p

Frequencies of diasease associated alleles [47] in survivor dogs and the original Mt. Kulal population.

<p>Frequencies of diasease associated alleles [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0199506#pone.0199506.ref047" target="_blank">47</a>] in survivor dogs and the original Mt. Kulal population.</p

DLA three locus haplotype frequency profiles for the different subpopulations of the Kenyan dogs.

<p>DLA three locus haplotype frequency profiles for the different subpopulations of the Kenyan dogs.</p

DLA three locus class II haplotypes in three Kenyan villages (%).

<p>DLA three locus class II haplotypes in three Kenyan villages (%).</p

Estimation of the population substructure across microsatellite loci in the Kenyan village dogs (K = 3) using Structure software.

<p>A different pattern was identified for Mt. Ngyiro.</p

Estimation of the population substructure across SNP loci in the Kenyan village dogs (K = 3) using structure software.

<p>No substructure was identified.</p

Principal coordinates analysis (PCoA) of the Kenyan village dogs.

<p>(A) PCoA with the 27 microsatellite loci (n = 150). (B) PCoA with the 3 MHC loci (n = 135). (C) PCoA with the 3 MHC and 16 SNP loci (n = 135). (D) PCoA with the 16 SNP loci (n = 150).</p

Neighbour-joining tree based on nucleotide sequences of the whole ITS region of Enterocytozoon bieneusi isolates, including our new sequences (underlined).

<p>Genotypes previously found in apes and humans are shaded. The host is listed for each sample. Values on branches are percent bootstrapping using 1 000 replicates. The bootstrap proportions greater than 50% are shown on each branch. Nucleotide sequences generated from this study are underlined and are deposited in the GenBank under Accession Nos. JQ837793-JQ837800.</p