Bayesian anomaly detection methods for social networks

Learning the network structure of a large graph is computationally demanding, and dynamically monitoring the network over time for any changes in structure threatens to be more challenging still. This paper presents a two-stage method for anomaly detection in dynamic graphs: the first stage uses simple, conjugate Bayesian models for discrete time counting processes to track the pairwise links of all nodes in the graph to assess normality of behavior; the second stage applies standard network inference tools on a greatly reduced subset of potentially anomalous nodes. The utility of the method is demonstrated on simulated and real data sets.Comment: Published in at http://dx.doi.org/10.1214/10-AOAS329 the Annals of Applied Statistics (http://www.imstat.org/aoas/) by the Institute of Mathematical Statistics (http://www.imstat.org

Market Day

Fiction by David Hear

Finding Groups in Gene Expression Data

The vast potential of the genomic insight offered by microarray technologies has led to their widespread use since they were introduced a decade ago. Application areas include gene function discovery, disease diagnosis, and inferring regulatory networks. Microarray experiments enable large-scale, high-throughput investigations of gene activity and have thus provided the data analyst with a distinctive, high-dimensional field of study. Many questions in this field relate to finding subgroups of data profiles which are very similar. A popular type of exploratory tool for finding subgroups is cluster analysis, and many different flavors of algorithms have been used and indeed tailored for microarray data. Cluster analysis, however, implies a partitioning of the entire data set, and this does not always match the objective. Sometimes pattern discovery or bump hunting tools are more appropriate. This paper reviews these various tools for finding interesting subgroups

Observations on the Kalliapseudid Tanaidacea (Crustacea: Malacostraca: Peracarida) from the Northwestern Atlantic, with an Illustrated Key to the Species

New information for the kalliapseudid Tanaidacea occurring in the northwestern Atlantic is presented and discussed, including data on range extensions and new depth ranges for 4 species. The taxa studied came from the shelf and coastal waters of the southeastern United States, Puerto Rico and Trinidad. The occurrence of Mesokalliapseudes bahamensis Sieg is extended from the Bahamas and Belize to the coastal waters of East and Gulf coasts (South Carolina to West Florida). The range of Psammokalliapseudes granulosus Brum is expanded northward into the eastern Gulf of Mexico and new locality records for this species are established for Tobago and Puerto Rico. Mesokalliapseudes brasiliensis (Băcescu), previously known from the southwestern Atlantic off Brazil, is reported from the coastal waters off Trinidad. The range of Tanapseudes gutui Hansknecht, Heard, and Bamber is expanded northward into the eastern Gulf of Mexico. New depth ranges are established for Alokalliapseudes macsweenyi (Drumm) (82 m), M. bahamensis (52 m), P. granulosus (53 m), and T. gutui (82 m). An offshore form of A. macsweenyi occurs at depths ranging from 10-82 m on the inner and mid continental shelf off the west coast of Florida (Gulf of Mexico); it differs from the coastal form by the shape and dentition of the male and female chelipeds. Synonymies, diagnoses, life history remarks, and an illustrated key to the seven kalliapseudid species known from the NW Atlantic are presented

A taxonomic guide to the mysids of the South Atlantic Bight.

Following the examination of extensive collections from the National Museum of Natural History (NMNH), the Southeastern Regional Taxonomic Center (SERTC), and other regional institutions, 18 species of the family Mysidae are recognized and described from the South Atlantic Bight (Cape Lookout, North Carolina to Cape Canaveral, Florida). This report includes synonymies of previous records, as well as new species distribution records. Previous regional accounts of Metamysidopsis munda and Metamysidopsis mexicana are attributed to Metamysidopsis swifti. New regional records are established for Amathimysis brattegardi, Heteromysis beetoni, and Siriella thompsonii. Two other species tentatively identified as Amathimysis sp. (nr. serrata) and Mysidopsis sp. (cf. mortenseni) may represent new taxa. Neobathymysis renoculata is included and discussed as a potential regional species. An illustrated key to the species currently known from the South Atlantic Bight is presented. Relevant taxonomic, distributional, and ecological information is also included for each species. (PDF file contains 45 pages.

Using ultrasound measurements of rump fat to assess nutritional condition of woodland caribou in northern British Columbia, Canada

Body reserves (fat and protein) of cervids are important to the reproductive success of individuals, and therefore may limit productivity of populations. We used a portable ultrasound machine to measure thickness of rump fat for 39 woodland caribou (Rangifer tarandus caribou) captured in the winters (January–February) of 2003 and 2004. We compared thickness of rump fat between pregnant and non-pregnant individuals in the Besa-Prophet drainage of northern British Columbia, Canada. Thirty-eight of the 39 females captured in British Columbia were adults and 34 of the adult caribou were pregnant (89.5 ± 5.1%, x– ± binomial SE). Pregnant individuals had more rump fat (0.60 ± 0.067 cm) than nonpregnant animals (0.20 ± 0.029 cm). Recognizing that deposition and mobilization of fat vary with age and possibly across the winter season, ultrasonography can be used as a non-invasive technique in the field to assist in estimating body fat of caribou

Northern Range Extensions for Caprella scaura Templeton, 1836 (Crustacea: Amphipoda: Caprellidae) on the Florida Gulf Coast and in South Carolina

Previous northwestern Atlantic records for the caprellid amphipod Caprella scaura Templeton, 1836 were confined to St. Croix (US Virgin Islands), St. Barthélemy, and Puerto Rico, islands bordering the northern Caribbean Sea. Based on recent collections, C. scaura is now reported from the Gulf of Mexico (St. Andrew Bay, Florida) and the US east coast (Charleston Harbor, South Carolina). These constitute the first records for this apparently non-indigenous species in waters of the continental eastern United States, establishing considerable northern range extensions for C. scaura in the northwest Atlantic

Anti-inflammatory activity of Punica granatum L. (Pomegranate) rind extracts applied topically to ex vivo skin

Coadministered pomegranate rind extract (PRE) and zinc (II) produces a potent virucidal activity against Herpes simplex virus (HSV); however, HSV infections are also associated with localised inflammation and pain. Here, the objective was to determine the anti-inflammatory activity and relative depth penetration of PRE, total pomegranate tannins (TPT) and zinc (II) in skin, ex vivo. PRE, TPT and ZnSO4 were dosed onto freshly excised ex vivo porcine skin mounted in Franz diffusion cells and analysed for COX-2, as a marker for modulation of the arachidonic acid inflammation pathway, by Western blotting and immunohistochemistry. Tape stripping was carried out to construct relative depth profiles. Topical application of PRE to ex vivo skin downregulated expression of COX-2, which was significant after just 6 h, and maintained for up to 24 h. This was achieved with intact stratum corneum, proving that punicalagin penetrated skin, further supported by the depth profiling data. When PRE and ZnSO4 were applied together, statistically equal downregulation of COX-2 was observed when compared to the application of PRE alone; no effect followed the application of ZnSO4 alone. TPT downregulated COX-2 less than PRE, indicating that tannins alone may not be entirely responsible for the anti-inflammatory activity of PRE. Punicalagin was found throughout the skin, in particular the lower regions, indicating appendageal delivery as a significant route to the viable epidermis. Topical application of TPT and PRE had significant anti-inflammatory effects in ex vivo skin, confirming that PRE penetrates the skin and modulates COX-2 regulation in the viable epidermis. Pomegranates have potential as a novel approach in ameliorating the inflammation and pain associated with a range of skin conditions, including cold sores and herpetic stromal keratitis