4 research outputs found
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.
- Author
- Al-Atrache Zein
- Alcoser Turi
- Alexander Lisa
- Alfano Matthew
- Alford Samantha
- Amy Nichols
- Anderson Alexander
- Anderson Marie
- Ang Andrew
- Ares Manuel, Jr
- Barber Amanda
- Barker Lucia
- Barrett Jonathan
- Barshop William
- Bauerle Cynthia
- Bayles Ian
- Belfield Katherine
- Best Aaron
- Borjon Agustin, Jr
- Bowman Charles
- Boyer Christine
- Bradley Kevin
- Bradley Victoria
- Broadway Lauren
- Budwal Keshav
- Busby Kayla
- Campbell Anne
- Campbell Ian
- Carey Alyssa
- Caruso Steven
- Chew Rebekah
- Cockburn Chelsea
- Cohen Lianne
- Corajod Jeffrey
- Cresawn Steven
- Davis Kimberly
- Deng Lisa
- Denver Dee
- Dixon Breyon
- Ekram Sahrish
- Elgin Sarah C.R.
- Engelsen Angela
- English Belle
- Erb Marcella
- Estrada Crystal
- Filliger Laura
- Findley Ann
- Forbes Lauren
- Forsyth Mark
- Fox Tyler
- Fritz Melissa
- Garcia Roberto
- George Zindzi
- Georges Anne
- Gissendanner Christopher
- Goff Shannon
- Goldstein Rebecca
- Gordon Kobie
- Green Russell
- Guerra Stephanie
- Guiney-Olsen Krysta
- Guiza Bridget
- Haghighat Leila
- Hagopian Garrett
- Harmon Catherine
- Harmson Jeremy
- Hartzog Grant
- Harvey Samuel
- Hatfull Graham
- He Kevin
- He Siping
- Healy Kaitlin
- Hendrix Roger
- Higinbotham Ellen
- Hildebrandt Erin
- Ho Jason
- Hogan Gina
- Hohenstein Victoria
- Holz Nathan
- Huang Vincent
- Hufford Ericka
- Hynes Peter
- Jackson Arrykka
- Jacobs-Sera Deborah
- Jansen Erica
- Jarvik Jonathan
- Jasinto Paul
- Jordan Tuajuanda
- Kasza Tomas
- Katelyn Murray
- Kelsey Jessica
- Kerrigan Larisa
- Khaw Daryl
- Kim Junghee
- Knutter Justin
- Ko Ching-Chung
- Larkin Gail
- Laroche Jennifer
- Latif Asma
- Leuba Kohana
- Leuba Sequoia
- Lewis Lynn
- Loesser-Case Kathryn
- Long Courtney
- Lopez A Javier
- Lowery Nicholas
- Lu Tina
- Mac Victor
- Masters Isaac
- McCloud Jazmyn
- McDonough Molly
- Medenbach Andrew
- Menon Anjali
- Miller Rachel
- Morgan Brandon
- Ng Patrick
- Nguyen Elvis
- Nguyen Emilie
- Nguyen Katrina
- Nicholson Kaylee
- Parnell Lindsay
- Peebles Craig
- Peirce Caitlin
- Perz Allison
- Peterson Luke
- Pferdehirt Rachel
- Philip Seegren
- Pogliano Joe
- Pogliano Kit
- Polley Tamsen
- Pope Welkin
- Puopolo Erica
- Rabinowitz Hannah
- Resiss Michael
- Rhyan Corwin
- Robinson Yetta
- Rodriguez Lauren
- Rose Andrew
- Rubin Jeffrey
- Ruby Jessica
- Russell Daniel
- Saha Margaret
- Sandoz James
- Savitskaya Judith
- Schipper Dale
- Schnitzler Christine
- Schott Amanda
- Segal J Bradley
- Shaffer Christopher
- Sheldon Kathryn
- Shepard Erica
- Shepardson Jonathan
- Shroff Madav
- Simmons Jessica
- Simms Erika
- Simpson Brandy
- Sinclair Kathryn
- Sjoholm Robert
- Slette Ingrid
- Spaulding Blaire
- Straub Clark
- Stukey Joseph
- Sughrue Trevor
- Tang Tin-Yun
- Tatyana Lyons
- Taylor Barbara
- Taylor Stephen
- Temple Louise
- Thompson Jasper
- Tokarz Michael
- Trapani Stephanie
- Troum Alexander
- Tsay Jonathan
- Tubbs Anthony Thomas
- Walton Jillian
- Wang Danielle
- Wang Hannah
- Warner John
- Weisser Emilie
- Wendler Samantha
- Weston-Hafer Kathleen
- Whelan Hilary
- Williamson Kurt
- Willis Angelica
- Wirtshafter Hannah
- Wong Theresa
- Wu Phillip
- Yang Yun jeong
- Yee Brandon
- Zaidins David
- Zhang Bo
- ZĂşniga Melina
- Publication venue
- Washington University Open Scholarship
- Publication date
- 01/01/2011
- Field of study
Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists
Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.
- Author
- A Javier Lopez
- Aaron A Best
- Agustin Borjon
- Alexander G Anderson
- Alexander P Troum
- Allison M Perz
- Alyssa Carey
- Amanda J Barber
- Amanda R Schott
- Andrew A S Ang
- Andrew C Rose
- Andrew J Medenbach
- Angela E Engelsen
- Angelica N Willis
- Anjali Menon
- Ann M Findley
- Anne E Georges
- Anne M Campbell
- Anthony T Tubbs
- Arrykka S Jackson
- Asma Latif
- Barbara J Taylor
- Belle E V English
- Blaire C Spaulding
- Bo Zhang
- Brandon C Yee
- Brandon K Morgan
- Brandy M Simpson
- Breyon R Dixon
- Bridget G Guiza
- Caitlin E Peirce
- Catherine J Harmon
- Charles A Bowman
- Chelsea L Cockburn
- Ching-Chung Ko
- Christine A Boyer
- Christine E Schnitzler
- Christopher D Shaffer
- Christopher R Gissendanner
- Clark L Straub
- Corwin N Rhyan
- Courtney A Long
- Craig L Peebles
- Crystal Estrada
- Cynthia M Bauerle
- Dale J Schipper
- Daniel A Russell
- Danielle H Wang
- Daryl Khaw
- David A Zaidins
- Deborah Jacobs-Sera
- Dee R Denver
- Ellen R Higinbotham
- Elvis Nguyen
- Emilie G Weisser
- Emilie T Nguyen
- Erica C Jansen
- Erica J Puopolo
- Erica M Shepard
- Ericka L Hufford
- Erika F Simms
- Erin N Hildebrandt
- Gail V Larkin
- Garrett V Hagopian
- Gina M Hogan
- Graham F Hatfull
- Grant A Hartzog
- Hannah S Rabinowitz
- Hannah S Wirtshafter
- Hannah Wang
- Hilary M Whelan
- Ian M Bayles
- Ian W Campbell
- Ingrid J Slette
- Isaac R Masters
- J Bradley Segal
- James W Sandoz
- Jason H Ho
- Jasper V Thompson
- Jazmyn J McCloud
- Jeffrey D Rubin
- Jeffrey M Corajod
- Jennifer R Laroche
- Jeremy S Harmson
- Jessica A Ruby
- Jessica M Simmons
- Jessica S Kelsey
- Jillian M Walton
- Joe Pogliano
- John R Warner
- Jonathan Jarvik
- Jonathan M Barrett
- Jonathan Tsay
- Jonathan W Shepardson
- Joseph Stukey
- Judith Savitskaya
- Junghee Kim
- Justin Z Knutter
- Kaitlin E Healy
- Katherine L Belfield
- Kathleen A Weston-Hafer
- Kathryn E Loesser-Casey
- Kathryn E Sheldon
- Kathryn M Sinclair
- Katrina T Nguyen
- Kayla N Busby
- Kaylee M Nicholson
- Keshav Budwal
- Kevin J He
- Kevin W Bradley
- Kimberly R Davis
- Kit Pogliano
- Kobie C Gordon
- Kohana D Leuba
- Krysta R Guiney-Olsen
- Kurt E Williamson
- Larisa A Kerrigan
- Laura Z Filliger
- Lauren Forbes
- Lauren L Rodriguez
- Lauren N Broadway
- Leila Haghighat
- Lianne B Cohen
- Lindsay A Parnell
- Lisa Deng
- Lisa M Alexander
- Louise M Temple
- Lucia P Barker
- Luke J Peterson
- Lynn O Lewis
- Lyons M Tatyana
- Madav K Shroff
- Manuel Ares
- Marcella L Erb
- Margaret S Saha
- Marie D Anderson
- Mark H Forsyth
- Matthew B Alfano
- Melina Y ZĂşniga
- Melissa J Fritz
- Michael J Resiss
- Michael P Tokarz
- Molly J McDonough
- Murray A Katelyn
- Nathan A Holz
- Nicholas Lowery
- Nichols E Amy
- Patrick C Ng
- Paul G Jasinto
- Peter M Hynes
- Phillip Wu
- Rachel E Pferdehirt
- Rachel Miller
- Rebecca Goldstein
- Rebekah D Chew
- Robert L Sjoholm
- Roberto Garcia
- Roger W Hendrix
- Russell D Green
- Sahrish Ekram
- Samantha C Wendler
- Samantha T Alford
- Samuel E Harvey
- Sarah C R Elgin
- Seegren V Philip
- Sequoia I Leuba
- Shannon Goff
- Siping He
- Stephanie E Trapani
- Stephanie L Guerra
- Stephen B Taylor
- Steven G Cresawn
- Steven M Caruso
- Tamsen Polley
- Theresa W Wong
- Tin-Yun Tang
- Tina Q Lu
- Tomas Kasza
- Trevor Sughrue
- Tuajuanda C Jordan
- Turi A Alcoser
- Tyler M Fox
- Victor Mac
- Victoria A Bradley
- Victoria G Hohenstein
- Vincent J Huang
- Welkin H Pope
- William D Barshop
- Yetta M Robinson
- Yun jeong Yang
- Zein Al-Atrache
- Zindzi D George
- Publication venue
- Public Library of Science (PLoS)
- Publication date
- 27/01/2011
- Field of study
Mycobacteriophages are viruses that infect mycobacterial hosts such as Mycobacterium smegmatis and Mycobacterium tuberculosis. All mycobacteriophages characterized to date are dsDNA tailed phages, and have either siphoviral or myoviral morphotypes. However, their genetic diversity is considerable, and although sixty-two genomes have been sequenced and comparatively analyzed, these likely represent only a small portion of the diversity of the mycobacteriophage population at large. Here we report the isolation, sequencing and comparative genomic analysis of 18 new mycobacteriophages isolated from geographically distinct locations within the United States. Although no clear correlation between location and genome type can be discerned, these genomes expand our knowledge of mycobacteriophage diversity and enhance our understanding of the roles of mobile elements in viral evolution. Expansion of the number of mycobacteriophages grouped within Cluster A provides insights into the basis of immune specificity in these temperate phages, and we also describe a novel example of apparent immunity theft. The isolation and genomic analysis of bacteriophages by freshman college students provides an example of an authentic research experience for novice scientists
Expanding the Diversity of Mycobacteriophages: Insights into Genome Architecture and Evolution
- Author
- A Bandhu
- A. Javier Lopez
- Aaron A. Best
- Agustin Borjon
- AJ Clark
- AL Delcher
- Alexander G. Anderson
- Alexander P. Troum
- Allison M. Perz
- Alyssa Carey
- AM Kropinski
- Amanda J. Barber
- Amanda R. Schott
- Andrew A. S. Ang
- Andrew C. Rose
- Andrew J. Medenbach
- Angela E. Engelsen
- Angelica N. Willis
- Anjali Menon
- Ann M. Findley
- Anne E. Georges
- Anne M. Campbell
- Anthony T. Tubbs
- Arrykka S. Jackson
- Asma Latif
- Barbara J. Taylor
- Belle E. V. English
- BL Soloff
- Blaire C. Spaulding
- Bo Zhang
- Brandon C. Yee
- Brandon K. Morgan
- Brandy M. Simpson
- Breyon R. Dixon
- Bridget G. Guiza
- CA Suttle
- Caitlin E. Peirce
- Catherine J. Harmon
- Charles A. Bowman
- Chelsea L. Cockburn
- Ching-Chung Ko
- Christine A. Boyer
- Christine E. Schnitzler
- Christopher D. Shaffer
- Christopher R. Gissendanner
- Clark L. Straub
- Corwin N. Rhyan
- Courtney A. Long
- Craig L. Peebles
- Crystal Estrada
- Cynthia M. Bauerle
- D Hanauer
- D Laslett
- Dale J. Schipper
- Daniel A. Russell
- Danielle H. Wang
- Daryl Khaw
- David A. Zaidins
- Deborah Jacobs-Sera
- Dee R. Denver
- DI Hanauer
- EJ Summer
- Ellen R. Higinbotham
- Elvis Nguyen
- Emilie G. Weisser
- Emilie T. Nguyen
- Erica C. Jansen
- Erica J. Puopolo
- Erica M. Shepard
- Ericka L. Hufford
- Erika F. Simms
- Erin N. Hildebrandt
- FB Perler
- FB Perler
- Gail V. Larkin
- Garrett V. Hagopian
- GF Hatfull
- GF Hatfull
- GF Hatfull
- GF Hatfull
- Gina M. Hogan
- Graham F. Hatfull
- Grant A. Hartzog
- H Brussow
- Hannah S. Rabinowitz
- Hannah S. Wirtshafter
- Hannah Wang
- Hilary M. Whelan
- Ian M. Bayles
- Ian W. Campbell
- Ingrid J. Slette
- Isaac R. Masters
- J Krumsiek
- J Xu
- J. Bradley Segal
- James W. Sandoz
- Jason H. Ho
- Jasper V. Thompson
- Jazmyn J. McCloud
- Jeffrey D. Rubin
- Jeffrey M. Corajod
- Jennifer R. Laroche
- Jeremy S. Harmson
- Jessica A. Ruby
- Jessica M. Simmons
- Jessica S. Kelsey
- Jillian M. Walton
- Joe Pogliano
- John R. Warner
- Jonathan Jarvik
- Jonathan M. Barrett
- Jonathan Tsay
- Jonathan W. Shepardson
- Joseph Stukey
- JS Fraser
- JT Martinsohn
- Judith Savitskaya
- Junghee Kim
- Justin Z. Knutter
- K Tori
- Kaitlin E. Healy
- Katherine L. Belfield
- Kathleen A. Weston-Hafer
- Kathryn E. Loesser-Casey
- Kathryn E. Sheldon
- Kathryn M. Sinclair
- Katrina T. Nguyen
- Kayla N. Busby
- Kaylee M. Nicholson
- KE Wommack
- Keshav Budwal
- Kevin J. He
- Kevin W. Bradley
- Kimberly R. Davis
- Kit Pogliano
- KL Brown
- Kobie C. Gordon
- Kohana D. Leuba
- KP Williams
- Krysta R. Guiney-Olsen
- Kurt E. Williamson
- L Ed
- Larisa A. Kerrigan
- Laura Z. Filliger
- Lauren Forbes
- Lauren L. Rodriguez
- Lauren N. Broadway
- LD Stein
- Leila Haghighat
- Lianne B. Cohen
- Lindsay A. Parnell
- Lisa Deng
- Lisa M. Alexander
- Louise M. Temple
- Lucia P. Barker
- Luke J. Peterson
- Lynn O. Lewis
- Lyons M. Tatyana
- M Belfort
- M Borodovsky
- M Henry
- Madav K. Shroff
- Manuel Ares
- Marcella L. Erb
- Margaret S. Saha
- Marie D. Anderson
- Mark H. Forsyth
- Matthew B. Alfano
- MC Smith
- ME Ford
- Melina Y. ZĂşniga
- Melissa J. Fritz
- MH Lee
- Michael J. Resiss
- Michael P. Tokarz
- MK Donnelly-Wu
- ML Pedulla
- MM Susskind
- Molly J. McDonough
- Murray A. Katelyn
- Nathan A. Holz
- Nicholas Lowery
- Nichols E. Amy
- P Hyman
- Patrick C. Ng
- Paul G. Jasinto
- Peter M. Hynes
- Phillip Wu
- R Calendar
- Rachel E. Pferdehirt
- Rachel Miller
- Ramy Aziz
- Rebecca Goldstein
- Rebekah D. Chew
- RJ Juhala
- Robert L. Sjoholm
- Roberto Garcia
- Roger W. Hendrix
- Russell D. Green
- RW Hendrix
- RW Hendrix
- RW Hendrix
- S Jain
- Sahrish Ekram
- Samantha C. Wendler
- Samantha T. Alford
- Samuel E. Harvey
- Sarah C. R. Elgin
- SB Snapper
- SC Harrison
- Seegren V. Philip
- Sequoia I. Leuba
- Shannon Goff
- Siping He
- SM Caruso
- Stephanie E. Trapani
- Stephanie L. Guerra
- Stephen B. Taylor
- Steven G. Cresawn
- Steven M. Caruso
- T Kwan
- T Kwan
- T Sampson
- Tamsen Polley
- Theresa W. Wong
- Tin-Yun Tang
- Tina Q. Lu
- TM Lowe
- Tomas Kasza
- Trevor Sughrue
- Tuajuanda C. Jordan
- Turi A. Alcoser
- Tyler M. Fox
- V Derbyshire
- V Kumar
- Victor Mac
- Victoria A. Bradley
- Victoria G. Hohenstein
- Vincent J. Huang
- Welkin H. Pope
- William D. Barshop
- WJ Kent
- Yetta M. Robinson
- Yun jeong Yang
- Zein Al-Atrache
- Zindzi D. George
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
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- V Andersen
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- W Arnold
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- W Kuhn
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- W Meckback
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- W Niessner
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- WK Dagenhart
- WK Dagenhart
- WL Reiter
- WM Currie
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- WP Alford
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- WR Dixon
- WR Falk
- WR Falk
- WR Gibbs
- WR Gibbs
- WR Gibbs
- WR Gibbs
- WR Hering
- WR Phillips
- WR Wylie
- WR Wylie
- WV Conner
- WV Hassenzahl
- Wvander Eijk
- WW Bowman
- WW Daehnick
- WZ Wade
- Y Abgrall
- Y Alexander
- Y Alexander
- Y Avishai
- Y Bornec
- Y Chanut
- Y Chanut
- Y Chanut
- Y Civelekoglu
- Y Dar
- Y Dmitrevskii
- Y Eisen
- Y Eisenberg
- Y Futami
- Y Iwasaki
- Y Kagawa
- Y Kanda
- Y Leduigou
- Y Masri
- Y Shamai
- Y Sugiyama
- Y Suzuki
- Y Uemura
- Y Yamazaki
- Y Yang
- YA Berdnikov
- YA Berezhnoj
- YA Shcherbakov
- YA Volchek
- YD Bayukov
- YG Mashkarov
- YG Sevast’yanov
- YH Shen
- YK Gavrilov
- YP Antuf’ev
- YP Dmitrevskii
- YR Gismatullin
- YS Horowitz
- YS Korotkin
- YT Borzunov
- YT Borzunov
- YT Borzunov
- YT Borzunov
- Yu Gorodkov V
- Yu Sevast’yanov
- YW Lui
- YY Chu
- Z Basrak
- Z Fraenkel
- Z Hulek
- Z Majka
- Z Zinamon
- ZE Switkowski
- ZE Switkowski
- ZE Switkowski
- ZE Switkowski
- ZE Switkowski
- ZG Werner
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 01/01/1981
- Field of study