*-DCC: A platform to collect, annotate, and explore a large variety of sequencing experiments.

BackgroundOver the past few years the variety of experimental designs and protocols for sequencing experiments increased greatly. To ensure the wide usability of the produced data beyond an individual project, rich and systematic annotation of the underlying experiments is crucial.FindingsWe first developed an annotation structure that captures the overall experimental design as well as the relevant details of the steps from the biological sample to the library preparation, the sequencing procedure, and the sequencing and processed files. Through various design features, such as controlled vocabularies and different field requirements, we ensured a high annotation quality, comparability, and ease of annotation. The structure can be easily adapted to a large variety of species. We then implemented the annotation strategy in a user-hosted web platform with data import, query, and export functionality.ConclusionsWe present here an annotation structure and user-hosted platform for sequencing experiment data, suitable for lab-internal documentation, collaborations, and large-scale annotation efforts

Outbreak of acute hepatitis C following the use of anti-hepatitis C virus--screened intravenous immunoglobulin therapy

BACKGROUND and AIMS: Hepatitis C virus (HCV) infection has been associated with intravenous (IV) immunoglobulin (Ig), and plasma donations used to prepare IV Ig are now screened to prevent transmission. Thirty-six patients from the United Kingdom received infusions from a batch of anti-HCV antibody-screened intravenous Ig (Gammagard; Baxter Healthcare Ltd., Thetford, Norfolk, England) that was associated with reports of acute hepatitis C outbreak in Europe. The aim of this study was to document the epidemiology of this outbreak. METHODS: Forty-six patients from the United Kingdom treated with Gammagard (34 exposed and 12 unexposed to the batch) returned epidemiological questionnaires. RESULTS: Eighty-two percent of the exposed patients (28 of 34) became positive for HCV RNA. Eighteen percent of the patients (6 of 34) who had infusions with this batch tested negative for HCV RNA, but 2 of the patients had abnormal liver function and subsequently seroconverted to anti-HCV antibody positive. Twenty-seven percent of the patients (9 of 34) developed jaundice, and 79% (27 of 34) had abnormal liver transferase levels. Virus isolates (n=21), including an isolate from the implicated batch, were genotype 1a and virtually identical by sequence analysis of the NS5 region, consistent with transmission from a single source. CONCLUSIONS: Hepatitis C infection can be transmitted by anti-HCV-screened IV Ig. Careful documentation of IV Ig batch numbers and regular biochemical monitoring is recommended for all IV Ig recipients

Electrowetting at the nanoscale

Using molecular simulations of nano-sized aqueous droplets on a model graphite surface we demonstrate remarkable sensitivity of water contact angles to the applied electric field polarity and direction relative to the liquid/solid interface. The effect is explained by analyzing the influence of the field on interfacial hydrogen bonding in the nanodrop, which in turn affects the interfacial tensions. The observed anisotropy in droplet wetting is a new nanoscale phenomenon that has so far been elusive as, in current experimental setups, surface molecules represent a very low fraction of the total number affected by the field. Our findings may have important implications for the design of electrowetting techniques in fabrication and property tuning of nanomaterials

Crossover between two different magnetization reversal modes in arrays of iron oxide nanotubes

The magnetization reversal in ordered arrays of iron oxide nanotubes of 50 nm outer diameter grown by atomic layer deposition is investigated theoretically as a function of the tube wall thickness, $d_{w}$. In thin tubes ($d_{w}<13$ nm) the reversal of magnetization is achieved by the propagation of a vortex domain boundary, while in thick tubes ($d_{w}>13$ nm) the reversal is driven by the propagation of a transverse domain boundary. Magnetostatic interactions between the tubes are responsible for a decrease of the coercive field in the array. Our calculations are in agreement with recently reported experimental results. We predict that the crossover between the vortex and transverse modes of magnetization reversal is a general phenomenon on the length scale considered.Comment: 8 pages, 7 figure