FlashFFTConv: Efficient Convolutions for Long Sequences with Tensor Cores

Convolution models with long filters have demonstrated state-of-the-art reasoning abilities in many long-sequence tasks but lag behind the most optimized Transformers in wall-clock time. A major bottleneck is the Fast Fourier Transform (FFT)--which allows long convolutions to run in $O(N logN)$ time in sequence length $N$ but has poor hardware utilization. In this paper, we study how to optimize the FFT convolution. We find two key bottlenecks: the FFT does not effectively use specialized matrix multiply units, and it incurs expensive I/O between layers of the memory hierarchy. In response, we propose FlashFFTConv. FlashFFTConv uses a matrix decomposition that computes the FFT using matrix multiply units and enables kernel fusion for long sequences, reducing I/O. We also present two sparse convolution algorithms--1) partial convolutions and 2) frequency-sparse convolutions--which can be implemented simply by skipping blocks in the matrix decomposition, enabling further opportunities for memory and compute savings. FlashFFTConv speeds up exact FFT convolutions by up to 7.93$\times$ over PyTorch and achieves up to 4.4$\times$ speedup end-to-end. Given the same compute budget, FlashFFTConv allows Hyena-GPT-s to achieve 2.3 points better perplexity on the PILE and M2-BERT-base to achieve 3.3 points higher GLUE score--matching models with twice the parameter count. FlashFFTConv also achieves 96.1% accuracy on Path-512, a high-resolution vision task where no model had previously achieved better than 50%. Furthermore, partial convolutions enable longer-sequence models--yielding the first DNA model that can process the longest human genes (2.3M base pairs)--and frequency-sparse convolutions speed up pretrained models while maintaining or improving model quality

Cross-Modal Data Programming Enables Rapid Medical Machine Learning

Labeling training datasets has become a key barrier to building medical machine learning models. One strategy is to generate training labels programmatically, for example by applying natural language processing pipelines to text reports associated with imaging studies. We propose cross-modal data programming, which generalizes this intuitive strategy in a theoretically-grounded way that enables simpler, clinician-driven input, reduces required labeling time, and improves with additional unlabeled data. In this approach, clinicians generate training labels for models defined over a target modality (e.g. images or time series) by writing rules over an auxiliary modality (e.g. text reports). The resulting technical challenge consists of estimating the accuracies and correlations of these rules; we extend a recent unsupervised generative modeling technique to handle this cross-modal setting in a provably consistent way. Across four applications in radiography, computed tomography, and electroencephalography, and using only several hours of clinician time, our approach matches or exceeds the efficacy of physician-months of hand-labeling with statistical significance, demonstrating a fundamentally faster and more flexible way of building machine learning models in medicine

Shoring Up the Foundations: Fusing Model Embeddings and Weak Supervision

Foundation models offer an exciting new paradigm for constructing models with out-of-the-box embeddings and a few labeled examples. However, it is not clear how to best apply foundation models without labeled data. A potential approach is to fuse foundation models with weak supervision frameworks, which use weak label sources -- pre-trained models, heuristics, crowd-workers -- to construct pseudolabels. The challenge is building a combination that best exploits the signal available in both foundation models and weak sources. We propose Liger, a combination that uses foundation model embeddings to improve two crucial elements of existing weak supervision techniques. First, we produce finer estimates of weak source quality by partitioning the embedding space and learning per-part source accuracies. Second, we improve source coverage by extending source votes in embedding space. Despite the black-box nature of foundation models, we prove results characterizing how our approach improves performance and show that lift scales with the smoothness of label distributions in embedding space. On six benchmark NLP and video tasks, Liger outperforms vanilla weak supervision by 14.1 points, weakly-supervised kNN and adapters by 11.8 points, and kNN and adapters supervised by traditional hand labels by 7.2 points.Comment: UAI 2022 Camera Read

Perfectly Balanced: Improving Transfer and Robustness of Supervised Contrastive Learning

An ideal learned representation should display transferability and robustness. Supervised contrastive learning (SupCon) is a promising method for training accurate models, but produces representations that do not capture these properties due to class collapse -- when all points in a class map to the same representation. Recent work suggests that "spreading out" these representations improves them, but the precise mechanism is poorly understood. We argue that creating spread alone is insufficient for better representations, since spread is invariant to permutations within classes. Instead, both the correct degree of spread and a mechanism for breaking this invariance are necessary. We first prove that adding a weighted class-conditional InfoNCE loss to SupCon controls the degree of spread. Next, we study three mechanisms to break permutation invariance: using a constrained encoder, adding a class-conditional autoencoder, and using data augmentation. We show that the latter two encourage clustering of latent subclasses under more realistic conditions than the former. Using these insights, we show that adding a properly-weighted class-conditional InfoNCE loss and a class-conditional autoencoder to SupCon achieves 11.1 points of lift on coarse-to-fine transfer across 5 standard datasets and 4.7 points on worst-group robustness on 3 datasets, setting state-of-the-art on CelebA by 11.5 points