17 research outputs found
Supply of methionine and arginine alters phosphorylation of mechanistic target of rapamycin (mTOR), circadian clock proteins, and alpha-s1-casein abundance in bovine mammary epithelial cells
[EN] Methionine (Met) and arginine (Arg) regulate casein protein abundance through alterations in activity of the mechanistic target of rapamycin complex 1 (mTORC1) signaling pathway. A potential role for the circadian clock network on the regulation of protein synthesis, partly via activity of mTORC1, has been highlighted in non-ruminants. The main objective of the study was to determine in ruminant mammary cells alterations in mRNA, protein abundance and phosphorylation status of mTORC1-related upstream targets, circadian clock proteins, and protein kinase AMP-activated catalytic subunit alpha (AMPK) in relation to alpha-s1-casein protein (CSN1S1) abundance in response to greater supply of Met and Arg alone or in combination. Primary bovine mammary epithelial cells (BMEC) were incubated for 12 h in a 2 x 2 arrangement of treatments with control media (ideal profile of amino acids, IPAA), or media supplemented with increased Met (incMet), Arg (incArg), or both (incMet + incArg). Data were analyzed testing the main effects of Met and Arg and their interaction. Among 7 amino acid (AA) transporters known to be mTORC1 targets, increasing supply of Arg downregulated SLC1A5, SLC3A2, SLC7A1, and SLC7A5, while increasing supply of Met upregulated SLC7A1. mRNA abundance of the cytosolic Arg sensor (CASTOR1) was lower when supply of Arg and Met alone increased. p-TSC2 (TSC complex subunit 2) was greater when the Arg supply was increased, while the phosphoralation ratio of p-AKT (AKT serine/threonine kinase 1):total (t) AKT and p-AMPK:tAMPK were lower. In spite of this, the ratio of p-mTOR:tmTOR nearly doubled with incArg but such response did not prevent a decrease in CSN1S1 abundance. The abundance of period circadian regulator 1 (PER1) protein nearly doubled with all treatments, but only incMet + incArg led to greater clock circadian regulator (CLOCK) protein abundance. Overall, data suggest that a greater supply of Met and Arg could influence CSN1S1 synthesis of BMEC through changes in the mTORC1, circadian clock, and AMPK pathways. Identifying mechanistic relationships between intracellular energy, total AA supply, and these pathways in the context of milk protein synthesis in ruminants merits further research.L. Hu was recipient of a 2017 Yangzhou University International Academic Exchange award and a Postgraduate Research & Practice Innovation Program of Jiangsu Province (CX137) to train at University of Illinois. L. Hu and M. Wang were supported by project from Natural Science Foundation of China (31672446). H. Dai and Y. Liang received scholarships from China Scholarship Council (Beijing, China) to undertake PhD training at University of Illinois.Hu, L.; Chen, Y.; Cortes, IM.; Coleman, DN.; Dai, H.; Liang, Y.; Parys, C.... (2020). Supply of methionine and arginine alters phosphorylation of mechanistic target of rapamycin (mTOR), circadian clock proteins, and alpha-s1-casein abundance in bovine mammary epithelial cells. Food & Function. 11(1):883-894. https://doi.org/10.1039/c9fo02379hS883894111Rius, A. G., Appuhamy, J. A. D. R. N., Cyriac, J., Kirovski, D., Becvar, O., Escobar, J., … Hanigan, M. D. (2010). Regulation of protein synthesis in mammary glands of lactating dairy cows by starch and amino acids. Journal of Dairy Science, 93(7), 3114-3127. doi:10.3168/jds.2009-2743Moshel, Y., Rhoads, R. E., & Barash, I. (2006). Role of amino acids in translational mechanisms governing milk protein synthesis in murine and ruminant mammary epithelial cells. Journal of Cellular Biochemistry, 98(3), 685-700. doi:10.1002/jcb.20825Nicklin, P., Bergman, P., Zhang, B., Triantafellow, E., Wang, H., Nyfeler, B., … Murphy, L. O. (2009). Bidirectional Transport of Amino Acids Regulates mTOR and Autophagy. Cell, 136(3), 521-534. doi:10.1016/j.cell.2008.11.044Appuhamy, J. A. D. R. N., Nayananjalie, W. A., England, E. M., Gerrard, D. E., Akers, R. M., & Hanigan, M. D. (2014). Effects of AMP-activated protein kinase (AMPK) signaling and essential amino acids on mammalian target of rapamycin (mTOR) signaling and protein synthesis rates in mammary cells. Journal of Dairy Science, 97(1), 419-429. doi:10.3168/jds.2013-7189HANIGAN, M. D., CROMPTON, L. A., BEQUETTE, B. J., MILLS, J. A. N., & FRANCE, J. (2002). Modelling Mammary Metabolism in the Dairy Cow to Predict Milk Constituent Yield, with Emphasis on Amino Acid Metabolism and Milk Protein Production: Model Evaluation. Journal of Theoretical Biology, 217(3), 311-330. doi:10.1006/jtbi.2002.3037Osorio, J. S., Ji, P., Drackley, J. K., Luchini, D., & Loor, J. J. (2013). Supplemental Smartamine M or MetaSmart during the transition period benefits postpartal cow performance and blood neutrophil function. Journal of Dairy Science, 96(10), 6248-6263. doi:10.3168/jds.2012-5790Weekes, T. L., Luimes, P. H., & Cant, J. P. (2006). Responses to Amino Acid Imbalances and Deficiencies in Lactating Dairy Cows. Journal of Dairy Science, 89(6), 2177-2187. doi:10.3168/jds.s0022-0302(06)72288-3Wu, G., Bazer, F. W., Davis, T. A., Kim, S. W., Li, P., Marc Rhoads, J., … Yin, Y. (2008). Arginine metabolism and nutrition in growth, health and disease. Amino Acids, 37(1), 153-168. doi:10.1007/s00726-008-0210-yMepham, T. B. (1982). Amino Acid Utilization by Lactating Mammary Gland. Journal of Dairy Science, 65(2), 287-298. doi:10.3168/jds.s0022-0302(82)82191-7Haque, M. N., Rulquin, H., Andrade, A., Faverdin, P., Peyraud, J. L., & Lemosquet, S. (2012). Milk protein synthesis in response to the provision of an «ideal» amino acid profile at 2 levels of metabolizable protein supply in dairy cows. Journal of Dairy Science, 95(10), 5876-5887. doi:10.3168/jds.2011-5230H. Rulquin , G.Raggio , H.Lapierre and S.Lemosquet , Energy and Protein Metabolism and Nutrition , Wageningen Academic Publishers , Wageningen , 2007Nan, X., Bu, D., Li, X., Wang, J., Wei, H., Hu, H., … Loor, J. J. (2014). Ratio of lysine to methionine alters expression of genes involved in milk protein transcription and translation and mTOR phosphorylation in bovine mammary cells. Physiological Genomics, 46(7), 268-275. doi:10.1152/physiolgenomics.00119.2013Fraser, D. L., Ørskov, E. R., Whitelaw, F. G., & Franklin, M. F. (1991). Limiting amino acids in dairy cows given casein as the sole source of protein. Livestock Production Science, 28(3), 235-252. doi:10.1016/0301-6226(91)90145-gDoepel, L., Pacheco, D., Kennelly, J. J., Hanigan, M. D., López, I. F., & Lapierre, H. (2004). Milk Protein Synthesis as a Function of Amino Acid Supply. Journal of Dairy Science, 87(5), 1279-1297. doi:10.3168/jds.s0022-0302(04)73278-6Haque, M. N., Rulquin, H., & Lemosquet, S. (2013). Milk protein responses in dairy cows to changes in postruminal supplies of arginine, isoleucine, and valine. Journal of Dairy Science, 96(1), 420-430. doi:10.3168/jds.2012-5610Salama, A. A. K., Duque, M., Wang, L., Shahzad, K., Olivera, M., & Loor, J. J. (2019). Enhanced supply of methionine or arginine alters mechanistic target of rapamycin signaling proteins, messenger RNA, and microRNA abundance in heat-stressed bovine mammary epithelial cells in vitro. Journal of Dairy Science, 102(3), 2469-2480. doi:10.3168/jds.2018-15219Dong, X., Zhou, Z., Saremi, B., Helmbrecht, A., Wang, Z., & Loor, J. J. (2018). Varying the ratio of Lys:Met while maintaining the ratios of Thr:Phe, Lys:Thr, Lys:His, and Lys:Val alters mammary cellular metabolites, mammalian target of rapamycin signaling, and gene transcription. Journal of Dairy Science, 101(2), 1708-1718. doi:10.3168/jds.2017-13351Deng, L., Jiang, C., Chen, L., Jin, J., Wei, J., Zhao, L., … Wang, P. (2015). The Ubiquitination of RagA GTPase by RNF152 Negatively Regulates mTORC1 Activation. Molecular Cell, 58(5), 804-818. doi:10.1016/j.molcel.2015.03.033Carroll, B., Maetzel, D., Maddocks, O. D., Otten, G., Ratcliff, M., Smith, G. R., … Korolchuk, V. I. (2016). Control of TSC2-Rheb signaling axis by arginine regulates mTORC1 activity. eLife, 5. doi:10.7554/elife.11058Wolfson, R. L., & Sabatini, D. M. (2017). The Dawn of the Age of Amino Acid Sensors for the mTORC1 Pathway. Cell Metabolism, 26(2), 301-309. doi:10.1016/j.cmet.2017.07.001Wang, S., Tsun, Z.-Y., Wolfson, R. L., Shen, K., Wyant, G. A., Plovanich, M. E., … Sabatini, D. M. (2015). Lysosomal amino acid transporter SLC38A9 signals arginine sufficiency to mTORC1. Science, 347(6218), 188-194. doi:10.1126/science.1257132Wolfson, R. L., Chantranupong, L., Saxton, R. A., Shen, K., Scaria, S. M., Cantor, J. R., & Sabatini, D. M. (2016). Sestrin2 is a leucine sensor for the mTORC1 pathway. Science, 351(6268), 43-48. doi:10.1126/science.aab2674Casey, T. M., Crodian, J., Erickson, E., Kuropatwinski, K. K., Gleiberman, A. S., & Antoch, M. P. (2014). Tissue-Specific Changes in Molecular Clocks During the Transition from Pregnancy to Lactation in Mice1. Biology of Reproduction, 90(6). doi:10.1095/biolreprod.113.116137Lamia, K. A., Storch, K.-F., & Weitz, C. J. (2008). Physiological significance of a peripheral tissue circadian clock. Proceedings of the National Academy of Sciences, 105(39), 15172-15177. doi:10.1073/pnas.0806717105Cho, H., Zhao, X., Hatori, M., Yu, R. T., Barish, G. D., Lam, M. T., … Evans, R. M. (2012). Regulation of circadian behaviour and metabolism by REV-ERB-α and REV-ERB-β. Nature, 485(7396), 123-127. doi:10.1038/nature11048Vollmers, C., Schmitz, R. J., Nathanson, J., Yeo, G., Ecker, J. R., & Panda, S. (2012). Circadian Oscillations of Protein-Coding and Regulatory RNAs in a Highly Dynamic Mammalian Liver Epigenome. Cell Metabolism, 16(6), 833-845. doi:10.1016/j.cmet.2012.11.004Cao, R. (2018). mTOR Signaling, Translational Control, and the Circadian Clock. Frontiers in Genetics, 9. doi:10.3389/fgene.2018.00367Ramanathan, C., Kathale, N. D., Liu, D., Lee, C., Freeman, D. A., Hogenesch, J. B., … Liu, A. C. (2018). mTOR signaling regulates central and peripheral circadian clock function. PLOS Genetics, 14(5), e1007369. doi:10.1371/journal.pgen.1007369Salfer, I. J., Dechow, C. D., & Harvatine, K. J. (2019). Annual rhythms of milk and milk fat and protein production in dairy cattle in the United States. Journal of Dairy Science, 102(1), 742-753. doi:10.3168/jds.2018-15040Li, S., Hosseini, A., Danes, M., Jacometo, C., Liu, J., & Loor, J. J. (2016). Essential amino acid ratios and mTOR affect lipogenic gene networks and miRNA expression in bovine mammary epithelial cells. Journal of Animal Science and Biotechnology, 7(1). doi:10.1186/s40104-016-0104-xVailati-Riboni, M., Xu, T., Qadir, B., Bucktrout, R., Parys, C., & Loor, J. J. (2019). In vitro methionine supplementation during lipopolysaccharide stimulation modulates immunometabolic gene network expression in isolated polymorphonuclear cells from lactating Holstein cows. Journal of Dairy Science, 102(9), 8343-8351. doi:10.3168/jds.2018-15737Kadegowda, A. K. G., Bionaz, M., Piperova, L. S., Erdman, R. A., & Loor, J. J. (2009). Peroxisome proliferator-activated receptor-γ activation and long-chain fatty acids alter lipogenic gene networks in bovine mammary epithelial cells to various extents. Journal of Dairy Science, 92(9), 4276-4289. doi:10.3168/jds.2008-1932Dong, X., Zhou, Z., Wang, L., Saremi, B., Helmbrecht, A., Wang, Z., & Loor, J. J. (2018). Increasing the availability of threonine, isoleucine, valine, and leucine relative to lysine while maintaining an ideal ratio of lysine:methionine alters mammary cellular metabolites, mammalian target of rapamycin signaling, and gene transcription. Journal of Dairy Science, 101(6), 5502-5514. doi:10.3168/jds.2017-13707Bionaz, M., & Loor, J. J. (2011). Gene Networks Driving Bovine Mammary Protein Synthesis during the Lactation cycle. Bioinformatics and Biology Insights, 5, BBI.S7003. doi:10.4137/bbi.s7003Zhou, Z., Vailati-Riboni, M., Trevisi, E., Drackley, J. K., Luchini, D. N., & Loor, J. J. (2016). Better postpartal performance in dairy cows supplemented with rumen-protected methionine compared with choline during the peripartal period. Journal of Dairy Science, 99(11), 8716-8732. doi:10.3168/jds.2015-10525National Research Council , Nutrient Requirements of Dairy Cattle , National Academies Press , Washington , 2001Batistel, F., Arroyo, J. M., Bellingeri, A., Wang, L., Saremi, B., Parys, C., … Loor, J. J. (2017). Ethyl-cellulose rumen-protected methionine enhances performance during the periparturient period and early lactation in Holstein dairy cows. Journal of Dairy Science, 100(9), 7455-7467. doi:10.3168/jds.2017-12689Batistel, F., Arroyo, J. M., Garces, C. I. M., Trevisi, E., Parys, C., Ballou, M. A., … Loor, J. J. (2018). Ethyl-cellulose rumen-protected methionine alleviates inflammation and oxidative stress and improves neutrophil function during the periparturient period and early lactation in Holstein dairy cows. Journal of Dairy Science, 101(1), 480-490. doi:10.3168/jds.2017-13185Zhou, Z., Ferdous, F., Montagner, P., Luchini, D. N., Corrêa, M. N., & Loor, J. J. (2018). Methionine and choline supply during the peripartal period alter polymorphonuclear leukocyte immune response and immunometabolic gene expression in Holstein cows. Journal of Dairy Science, 101(11), 10374-10382. doi:10.3168/jds.2018-14972Vailati-Riboni, M., Zhou, Z., Jacometo, C. B., Minuti, A., Trevisi, E., Luchini, D. N., & Loor, J. J. (2017). Supplementation with rumen-protected methionine or choline during the transition period influences whole-blood immune response in periparturient dairy cows. Journal of Dairy Science, 100(5), 3958-3968. doi:10.3168/jds.2016-11812Ma, Y. F., Batistel, F., Xu, T. L., Han, L. Q., Bucktrout, R., Liang, Y., … Loor, J. J. (2019). Phosphorylation of AKT serine/threonine kinase and abundance of milk protein synthesis gene networks in mammary tissue in response to supply of methionine in periparturient Holstein cows. Journal of Dairy Science, 102(5), 4264-4274. doi:10.3168/jds.2018-15451Reynolds, C. K., Harmon, D. L., & Cecava, M. J. (1994). Absorption and Delivery of Nutrients for Milk Protein Synthesis by Portal-Drained Viscera. Journal of Dairy Science, 77(9), 2787-2808. doi:10.3168/jds.s0022-0302(94)77220-9Bequette, B. J., Backwell, F. R. C., & Crompton, L. A. (1998). Current Concepts of Amino Acid and Protein Metabolism in the Mammary Gland of the Lactating Ruminant. Journal of Dairy Science, 81(9), 2540-2559. doi:10.3168/jds.s0022-0302(98)70147-xTaylor, P. M. (2013). Role of amino acid transporters in amino acid sensing. The American Journal of Clinical Nutrition, 99(1), 223S-230S. doi:10.3945/ajcn.113.070086Dai, H., Coleman, D. N., Hu, L., Martinez-Cortés, I., Wang, M., Parys, C., … Loor, J. J. (2020). Methionine and arginine supplementation alter inflammatory and oxidative stress responses during lipopolysaccharide challenge in bovine mammary epithelial cells in vitro. Journal of Dairy Science, 103(1), 676-689. doi:10.3168/jds.2019-16631Hatzoglou, M., Fernandez, J., Yaman, I., & Closs, E. (2004). REGULATION OF CATIONIC AMINO ACID TRANSPORT: The Story of the CAT-1 Transporter. Annual Review of Nutrition, 24(1), 377-399. doi:10.1146/annurev.nutr.23.011702.073120Fuchs, B. C., & Bode, B. P. (2005). Amino acid transporters ASCT2 and LAT1 in cancer: Partners in crime? Seminars in Cancer Biology, 15(4), 254-266. doi:10.1016/j.semcancer.2005.04.005Zheng, L., Zhang, W., Zhou, Y., Li, F., Wei, H., & Peng, J. (2016). Recent Advances in Understanding Amino Acid Sensing Mechanisms that Regulate mTORC1. International Journal of Molecular Sciences, 17(10), 1636. doi:10.3390/ijms17101636Suryawan, A. (2011). Regulation of protein synthesis by amino acids in muscle of neonates. Frontiers in Bioscience, 16(1), 1445. doi:10.2741/3798Averous, J., Lambert-Langlais, S., Mesclon, F., Carraro, V., Parry, L., Jousse, C., … Fafournoux, P. (2016). GCN2 contributes to mTORC1 inhibition by leucine deprivation through an ATF4 independent mechanism. Scientific Reports, 6(1). doi:10.1038/srep27698Xia, J., Wang, R., Zhang, T., & Ding, J. (2016). Structural insight into the arginine-binding specificity of CASTOR1 in amino acid-dependent mTORC1 signaling. Cell Discovery, 2(1). doi:10.1038/celldisc.2016.35Chantranupong, L., Scaria, S. M., Saxton, R. A., Gygi, M. P., Shen, K., Wyant, G. A., … Sabatini, D. M. (2016). The CASTOR Proteins Are Arginine Sensors for the mTORC1 Pathway. Cell, 165(1), 153-164. doi:10.1016/j.cell.2016.02.035Cai, W., Wei, Y., Jarnik, M., Reich, J., & Lilly, M. A. (2016). The GATOR2 Component Wdr24 Regulates TORC1 Activity and Lysosome Function. PLOS Genetics, 12(5), e1006036. doi:10.1371/journal.pgen.1006036Shen, K., Huang, R. K., Brignole, E. J., Condon, K. J., Valenstein, M. L., Chantranupong, L., … Sabatini, D. M. (2018). Architecture of the human GATOR1 and GATOR1–Rag GTPases complexes. Nature, 556(7699), 64-69. doi:10.1038/nature26158Sancak, Y., Peterson, T. R., Shaul, Y. D., Lindquist, R. A., Thoreen, C. C., Bar-Peled, L., & Sabatini, D. M. (2008). The Rag GTPases Bind Raptor and Mediate Amino Acid Signaling to mTORC1. Science, 320(5882), 1496-1501. doi:10.1126/science.1157535Saxton, R. A., Chantranupong, L., Knockenhauer, K. E., Schwartz, T. U., & Sabatini, D. M. (2016). Mechanism of arginine sensing by CASTOR1 upstream of mTORC1. Nature, 536(7615), 229-233. doi:10.1038/nature19079Inoki, K., Ouyang, H., Zhu, T., Lindvall, C., Wang, Y., Zhang, X., … Guan, K.-L. (2006). TSC2 Integrates Wnt and Energy Signals via a Coordinated Phosphorylation by AMPK and GSK3 to Regulate Cell Growth. Cell, 126(5), 955-968. doi:10.1016/j.cell.2006.06.055Huang, J., & Manning, B. D. (2008). The TSC1–TSC2 complex: a molecular switchboard controlling cell growth. Biochemical Journal, 412(2), 179-190. doi:10.1042/bj20080281Menon, S., Dibble, C. C., Talbott, G., Hoxhaj, G., Valvezan, A. J., Takahashi, H., … Manning, B. D. (2014). Spatial Control of the TSC Complex Integrates Insulin and Nutrient Regulation of mTORC1 at the Lysosome. Cell, 156(4), 771-785. doi:10.1016/j.cell.2013.11.049Manning, B. D., Tee, A. R., Logsdon, M. N., Blenis, J., & Cantley, L. C. (2002). Identification of the Tuberous Sclerosis Complex-2 Tumor Suppressor Gene Product Tuberin as a Target of the Phosphoinositide 3-Kinase/Akt Pathway. Molecular Cell, 10(1), 151-162. doi:10.1016/s1097-2765(02)00568-3Kahn, B. B., Alquier, T., Carling, D., & Hardie, D. G. (2005). AMP-activated protein kinase: Ancient energy gauge provides clues to modern understanding of metabolism. Cell Metabolism, 1(1), 15-25. doi:10.1016/j.cmet.2004.12.003Inoki, K., Zhu, T., & Guan, K.-L. (2003). TSC2 Mediates Cellular Energy Response to Control Cell Growth and Survival. Cell, 115(5), 577-590. doi:10.1016/s0092-8674(03)00929-2Hindupur, S. K., González, A., & Hall, M. N. (2015). The Opposing Actions of Target of Rapamycin and AMP-Activated Protein Kinase in Cell Growth Control. Cold Spring Harbor Perspectives in Biology, 7(8), a019141. doi:10.1101/cshperspect.a019141Ma, L., Chen, Z., Erdjument-Bromage, H., Tempst, P., & Pandolfi, P. P. (2005). Phosphorylation and Functional Inactivation of TSC2 by Erk. Cell, 121(2), 179-193. doi:10.1016/j.cell.2005.02.031ROLFE, M., McLEOD, L. E., PRATT, P. F., & PROUD, C. G. (2005). Activation of protein synthesis in cardiomyocytes by the hypertrophic agent phenylephrine requires the activation of ERK and involves phosphorylation of tuberous sclerosis complex 2 (TSC2). Biochemical Journal, 388(3), 973-984. doi:10.1042/bj20041888Yang, J.-X., Wang, C.-H., Xu, Q.-B., Zhao, F.-Q., Liu, J.-X., & Liu, H.-Y. (2015). Methionyl-Methionine Promotes α-s1 Casein Synthesis in Bovine Mammary Gland Explants by Enhancing Intracellular Substrate Availability and Activating JAK2-STAT5 and mTOR-Mediated Signaling Pathways. The Journal of Nutrition, 145(8), 1748-1753. doi:10.3945/jn.114.208330Ko, C. H., & Takahashi, J. S. (2006). Molecular components of the mammalian circadian clock. Human Molecular Genetics, 15(suppl_2), R271-R277. doi:10.1093/hmg/ddl207Yagita, K., Tamanini, F., van der Horst, G. T. J., & Okamura, H. (2001). Molecular Mechanisms of the Biological Clock in Cultured Fibroblasts. Science, 292(5515), 278-281. doi:10.1126/science.1059542Preitner, N., Damiola, F., Luis-Lopez-Molina, Zakany, J., Duboule, D., Albrecht, U., & Schibler, U. (2002). The Orphan Nuclear Receptor REV-ERBα Controls Circadian Transcription within the Positive Limb of the Mammalian Circadian Oscillator. Cell, 110(2), 251-260. doi:10.1016/s0092-8674(02)00825-5Reinke, H., & Asher, G. (2019). Crosstalk between metabolism and circadian clocks. Nature Reviews Molecular Cell Biology, 20(4), 227-241. doi:10.1038/s41580-018-0096-9Balsalobre, A., Brown, S. A., Marcacci, L., Tronche, F., Kellendonk, C., Reichardt, H. M., … Schibler, U. (2000). Resetting of Circadian Time in Peripheral Tissues by Glucocorticoid Signaling. Science, 289(5488), 2344-2347. doi:10.1126/science.289.5488.2344Lamia, K. A., Sachdeva, U. M., DiTacchio, L., Williams, E. C., Alvarez, J. G., Egan, D. F., … Evans, R. M. (2009). AMPK Regulates the Circadian Clock by Cryptochrome Phosphorylation and Degradation. Science, 326(5951), 437-440. doi:10.1126/science.1172156Zheng, X., & Sehgal, A. (2010). AKT and TOR Signaling Set the Pace of the Circadian Pacemaker. Current Biology, 20(13), 1203-1208. doi:10.1016/j.cub.2010.05.027Ye, R., Selby, C. P., Chiou, Y.-Y., Ozkan-Dagliyan, I., Gaddameedhi, S., & Sancar, A. (2014). Dual modes of CLOCK:BMAL1 inhibition mediated by Cryptochrome and Period proteins in the mammalian circadian clock. Genes & Development, 28(18), 1989-1998. doi:10.1101/gad.249417.114Luciano, A. K., Zhou, W., Santana, J. M., Kyriakides, C., Velazquez, H., & Sessa, W. C. (2018). CLOCK phosphorylation by AKT regulates its nuclear accumulation and circadian gene expression in peripheral tissues. Journal of Biological Chemistry, 293(23), 9126-9136. doi:10.1074/jbc.ra117.000773Dang, F., Sun, X., Ma, X., Wu, R., Zhang, D., Chen, Y., … L
Robust estimation of bacterial cell count from optical density
Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data
Estudio comparativo sobre la accesibilidad a los espacios lúdicos entre China y España
[ES] El juego es una herramienta que permite los niños ser capaz de desarrollar sus habilidades tanto fÃsicas como psÃquicas sin importar las diversidades sexuales, culturales, raciales y fÃsicas. En cuanto a las ciudades, los parques infantiles juegan un papel importante a dÃa de hoy brindando los lugares seguros y exclusivos para los niños, entre ellos, también muestra la atención creciente hacia la instalación del espacio lúdico accesible. El propósito de esta investigación es mostrar la importancia del juego a lo largo del desarrollo de niños, discutir la cuestión de crear un entorno lúdico accesible para todos los niños, descubrir la situación actual del espacio lúdico entre España y China con respecto a la accesibilidad y al final esperar, a través del proyecto, poder contribuir a concienciar a la sociedad y a los gestores públicos de la necesidad de la accesibilidad universal.[EN] The game is a tool that allows children to be able to develop their physical and psychological abilities regardless of sexual, cultural, racial and physical diversities. As for cities, playgrounds play an important role today providing safe and exclusive places for children, among them, it also shows increasing attention towards the installation of accessible recreational space. The purpose of this research is to show the importance of the game throughout the development of children, to discuss the issue of creating a playful environment accessible to all children, to discover the current situation of the recreational space between Spain and China regarding accessibility and in the end, expect, through the project, to contribute to raising awareness among society and public managers of the need for universal accessibility.Dai, L. (2019). Estudio comparativo sobre la accesibilidad a los espacios lúdicos entre China y España. Universitat Politècnica de València. http://hdl.handle.net/10251/131578TFG
Structure and Capacitance of Electrical Double Layers at the Graphene–Ionic Liquid Interface
Molecular dynamics simulations are carried out to investigate the structure and capacitance of the electrical double layers (EDLs) at the interface of vertically oriented graphene and ionic liquids [EMIM]+/[BF4]−. The distribution and migration of the ions in the EDL on the rough and non-rough electrode surfaces with different charge densities are compared and analyzed, and the effect of the electrode surface morphology on the capacitance of the EDL is clarified. The results suggest that alternate distributions of anions and cations in several consecutive layers are formed in the EDL on the electrode surface. When the electrode is charged, the layers of [BF4]− anions experience more significant migration than those of [EMIM]+ cations. These ion layers can be extended deeper into the bulk electrolyte solution by the stronger interaction of the rough electrode, compared to those on the non-rough electrode surface. The potential energy valley of ions on the neutral electrode surface establishes a potential energy difference to compensate the energy cost of the ion accumulation, and is capable of producing a potential drop across the EDL on the uncharged electrode surface. Due to the greater effective contact area between the ions and electrode, the rough electrode possesses a larger capacitance than the non-rough one. In addition, it is harder for the larger-sized [EMIM]+ cations to accumulate in the narrow grooves on the rough electrode, when compared with the smaller [BF4]−. Consequently, the double-hump-shaped C–V curve (which demonstrates the relationship between differential capacitance and potential drop across the EDL) for the rough electrode is asymmetric, where the capacitance increases more significantly when the electrode is positively charged
Structure and Capacitance of Electrical Double Layers at the Graphene–Ionic Liquid Interface
Molecular dynamics simulations are carried out to investigate the structure and capacitance of the electrical double layers (EDLs) at the interface of vertically oriented graphene and ionic liquids [EMIM]+/[BF4]−. The distribution and migration of the ions in the EDL on the rough and non-rough electrode surfaces with different charge densities are compared and analyzed, and the effect of the electrode surface morphology on the capacitance of the EDL is clarified. The results suggest that alternate distributions of anions and cations in several consecutive layers are formed in the EDL on the electrode surface. When the electrode is charged, the layers of [BF4]− anions experience more significant migration than those of [EMIM]+ cations. These ion layers can be extended deeper into the bulk electrolyte solution by the stronger interaction of the rough electrode, compared to those on the non-rough electrode surface. The potential energy valley of ions on the neutral electrode surface establishes a potential energy difference to compensate the energy cost of the ion accumulation, and is capable of producing a potential drop across the EDL on the uncharged electrode surface. Due to the greater effective contact area between the ions and electrode, the rough electrode possesses a larger capacitance than the non-rough one. In addition, it is harder for the larger-sized [EMIM]+ cations to accumulate in the narrow grooves on the rough electrode, when compared with the smaller [BF4]−. Consequently, the double-hump-shaped C–V curve (which demonstrates the relationship between differential capacitance and potential drop across the EDL) for the rough electrode is asymmetric, where the capacitance increases more significantly when the electrode is positively charged
A CBM development well type optimization method based on the long-run marginal cost
Reasonable optimization of development well type is the prerequisite to realize the economic and effective development of coalbed methane (CBM). However, the existing CBM development well type optimization methods are disadvantageous in many aspects. CBM is a kind of typical unconventional natural gas resource, and its study focuses on single-well evaluation. In this paper, the assessment method and the evaluation index (EI) for CBM development well type optimization based on the long-run marginal cost (LRMC) were constructed on the basis of CBM characteristics from the perspective of economic feasibility. Then, the corresponding decision making criteria were established. Finally, this newly developed method was applied to the well-type optimization of different development blocks in two important CBM development basins in China. And the following research and application results were obtained. First, under the current technical and economic conditions, both directional well and horizontal well are economically feasible to the development of Block A in the Qinshui Basin and Block B in eastern margin of the Ordos Basin, and the economically optimal well type is a horizontal well in Block A and a directional well in Block B. Second, compared with single-well steady daily gas production and single-well investment, the evaluation results on the schemes of different well types present critical value, above which the economic benefit of different schemes are equivalent. Third, EI of different well types is affected by many factors, e.g. geological characteristic of gas reservoirs, single-well production profile, CBM selling price, investment and cost. Therefore, it is necessary to carry out dynamic analysis and update in time based on the change of various influential factors so as to ensure the rationality of decision-making. In conclusion, this newly developed method is intrinsically consistent with traditional evaluation methods, and it is more advantageous with strong operability, intuitive evaluation results and quick and accurate optimization of CBM development well types. Keywords: Coalbed methane (CBM), Long-run marginal cost (LRMC), Development well, Well-type optimization, Directional wells, Horizontal wells, Surface development, Decision making criteria, Critical poin
Optimization analysis of time frequency spectrum enhancement of tunnel blasting vibration signal
Aiming at the problem of insufficient time-frequency resolution of tunnel blasting vibration signal, a time-frequency image enhancement algorithm based on convolutional neural network is applied, through the time-frequency image enhancement of the measured tunnel blasting signal, the aggregation range of the blasting signal energy in the time-frequency domain is captured, and the real signal reflecting the blasting characteristics is reconstructed; according to the real signal, the initiation time of detonator in blasting network is accurately distinguished, and the characteristics of tunnel blasting detonator disaster source are identified.The analysis shows that the time-frequency image enhancement algorithm based on convolutional neural network can effectively suppress the cross-terms in the signal, retain the auto-terms of the signal to the greatest extent, and improve the energy aggregation and time-frequency resolution of the blasting signal; The mixed use of different batches of detonators is the main disaster causing factor of tunnel safety.Supervision should be strengthened to realize safe and efficient tunnel construction
Molecular Dynamics Simulation of Distribution and Diffusion Behaviour of Oil-Water Interfaces
The distribution and diffusion behaviors of microscopic particles at fluorobenzene-water and pentanol-water interfaces are investigated using molecular dynamics simulation. The influences of Na+/Cl- ions and the steric effects of organic molecules are examined. The concentration distributions of different species, the orientations of oil molecules at the interface, and oil-water interface morphology as well as the diffusion behaviors of water molecules are explored and analyzed. The results indicate that a few fluorobenzene molecules move into the water phase influenced by Na+/Cl- ions, while the pentanol molecules at the interface prefer orientating their hydrophilic groups toward the water phase due to their large size. The water molecules more easily burst into the pentanol phase with larger molecular spaces. As the concentration of ions in the water phase increases, more water molecules enter into the pentanol molecules, leading to larger interface roughness and interface thickness. In addition, a lower diffusion coefficient for water molecules at the fluorobenzene-water interface are observed when introducing Na+/Cl- ions in the water phase, while for the pentanol-water system, the mobility of interfacial water molecules are enhanced with less ions and inhibited with more ions
Numerical Analysis of Space Deployable Structure Based on Shape Memory Polymers
Shape memory polymers (SMPs) have been applied in aerospace engineering as deployable space structures. In this work, the coupled finite element method (FEM) was established based on the generalized Maxwell model and the time–temperature equivalence principle (TTEP). The thermodynamic behavior and shape memory effects of a single-arm deployment structure (F-DS) and four-arm deployment structure (F-DS) based on SMPs were analyzed using the coupled FEM. Good consistency was obtained between the experimental data and simulation data for the tensile and S-DS recovery forces, verifying that the coupled FEM can accurately and reliably describe the thermodynamic behavior and shape memory effects of the SMP structure. The step-by-step driving structure is suitable for use as a large-scale deployment structure in space. This coupled FEM provides a new direction for future research on epoxy SMPs