Rapid and Efficient Clearance of Blood-borne Virus by Liver Sinusoidal Endothelium

The liver removes quickly the great bulk of virus circulating in blood, leaving only a small fraction to infect the host, in a manner characteristic of each virus. The scavenger cells of the liver sinusoids are implicated, but the mechanism is entirely unknown. Here we show, borrowing a mouse model of adenovirus clearance, that nearly all infused adenovirus is cleared by the liver sinusoidal endothelial cell (LSEC). Using refined immunofluorescence microscopy techniques for distinguishing macrophages and endothelial cells in fixed liver, and identifying virus by two distinct physicochemical methods, we localized adenovirus 1 minute after infusion mainly to the LSEC (∼90%), finding ∼10% with Kupffer cells (KC) and none with hepatocytes. Electron microscopy confirmed our results. In contrast with much prior work claiming the main scavenger to be the KC, our results locate the clearance mechanism to the LSEC and identify this cell as a key site of antiviral activity

Computational analyses of eukaryotic promoters

Computational analysis of eukaryotic promoters is one of the most difficult problems in computational genomics and is essential for understanding gene expression profiles and reverse-engineering gene regulation network circuits. Here I give a basic introduction of the problem and recent update on both experimental and computational approaches. More details may be found in the extended references. This review is based on a summer lecture given at Max Planck Institute at Berlin in 2005

Epigenetic mechanisms of endothelial dysfunction in type 2 diabetes

The development of type-2 diabetes mellitus (T2DM) and its complications is largely due to the complex interaction between genetic factors and environmental influences, mainly dietary habits and lifestyle, which can either accelerate or slow down disease progression. Recent findings suggest the potential involvement of epigenetic mechanisms as a crucial interface between the effects of genetic predisposition and environmental factors. The common denominator of environmental factors promoting T2DM development and progression is that they trigger an inflammatory response, promoting inflammation-mediated insulin resistance and endothelial dysfunction. Proinflammatory stimuli, including hyperglycemia, oxidative stress, and other inflammatory mediators, can affect epigenetic mechanisms, altering the expression of specific genes in target cells without changes in underlying DNA sequences. DNA methylation and post-translational histone modifications (PTHMs) are the most extensively investigated epigenetic mechanisms. Over the past few years, non-coding RNA, including microRNAs (miRNAs), have also emerged as key players in gene expression modulation. MiRNAs can be actively released or shed by cells in the bloodstream and taken up in active form by receiving cells, acting as efficient systemic communication tools. The miRNAs involved in modulation of inflammatory pathways (inflammamiRs), such as miR-146a, and those highly expressed in endothelial lineages and hematopoietic progenitor cells (angiomiRs), such as miR-126, are the most extensively studied circulating miRNAs in T2DM. However, data on circulating miRNA signatures associated with specific diabetic complications are still lacking. Since immune cells and endothelial cells are primarily involved in the vascular complications of T2DM, their relative contribution to circulating miRNA signatures needs to be elucidated. An integrated approach encompassing different epigenetic mechanisms would have the potential to provide new mechanistic insights into the genesis of diabetes and its severe vascular complications and identify a panel of epigenetic markers with diagnostic/prognostic and therapeutic relevance

Sampling methods used for the collection of particle-phase organic and elemental carbon during ACE-Asia

The semi-volatile nature of carbonaceous aerosols complicates their collection, and for this reason special air sampling configurations must be utilized. ACE-Asia provided a unique opportunity to compare different sampling techniques for collecting carbonaceous aerosols. In this paper detailed comparisons between filter-based carbonaceous aerosol sampling methods are made. The majority of organic carbon (OC) present on a backup quartz fiber filter (QFF) in an undenuded-filter sampler resulted from the adsorption of native gaseous OC rather than OC evaporated from collected particles. The level of OC on a backup QFF placed behind a QFF was lower than the level present on a backup QFF placed behind a Teflon membrane filter (TMF) indicating that gas/filter equilibrium may not be achieved in some QFF front and backup filter pairs. Gas adsorption artifacts can result in a 20-100\% overestimation of the ambient particle-phase OC concentration. The gas collection efficiency of XAD-coated and carbon-impregnated filter-lined denuders were not always 100\%, but, nonetheless, such denuders minimize gas adsorption artifacts. The median fraction of particle-phase OC that is estimated to evaporate from particles collected by denuder-filter samplers ranged from 0 to 0.2; this value depends on the sampler configuration, chemical composition of the OC, and sampling conditions. After properly correcting for sampling artifacts, the measured OC concentration may differ by 10\% between undenuded- and denuder-filter samplers. Uncorrected, such differences can be as large as a factor two, illustrating the importance of sampling configurations in which gas adsorption or evaporation artifacts are reduced or can be corrected. (C) 2003 Elsevier Science Ltd. All rights reserved