An Integrated Functional Genomics Consortium to Increase Carbon Sequestration in Poplars: Optimizing Aboveground Carbon Gain

This project used gene expression patterns from two forest Free-Air CO2 Enrichment (FACE) experiments (Aspen FACE in northern Wisconsin and POPFACE in Italy) to examine ways to increase the aboveground carbon sequestration potential of poplars (Populus). The aim was to use patterns of global gene expression to identify candidate genes for increased carbon sequestration. Gene expression studies were linked to physiological measurements in order to elucidate bottlenecks in carbon acquisition in trees grown in elevated CO2 conditions. Delayed senescence allowing additional carbon uptake late in the growing season, was also examined, and expression of target genes was tested in elite P. deltoides x P. trichocarpa hybrids. In Populus euramericana, gene expression was sensitive to elevated CO2, but the response depended on the developmental age of the leaves. Most differentially expressed genes were upregulated in elevated CO2 in young leaves, while most were downregulated in elevated CO2 in semi-mature leaves. In P. deltoides x P. trichocarpa hybrids, leaf development and leaf quality traits, including leaf area, leaf shape, epidermal cell area, stomatal number, specific leaf area, and canopy senescence were sensitive to elevated CO2. Significant increases under elevated CO2 occurred for both above- and belowground growth in the F-2 generation. Three areas of the genome played a role in determining aboveground growth response to elevated CO2, with three additional areas of the genome important in determining belowground growth responses to elevated CO2. In Populus tremuloides, CO2-responsive genes in leaves were found to differ between two aspen clones that showed different growth responses, despite similarity in many physiological parameters (photosynthesis, stomatal conductance, and leaf area index). The CO2-responsive clone shunted C into pathways associated with active defense/response to stress, carbohydrate/starch biosynthesis and subsequent growth. The CO2-unresponsive clone partitioned C into pathways associated with passive defense and cell wall thickening. These results indicate that there is significant variation in gene expression patterns between different tree genotypes. Consequently, future efforts to improve productivity or other advantageous traits for carbon sequestration should include an examination of genetic variability in CO2 responsiveness

Soil respiration in northern forests exposed to elevated atmospheric carbon dioxide and ozone

The aspen free-air CO 2 and O 3 enrichment (FACTS II–FACE) study in Rhinelander, Wisconsin, USA, is designed to understand the mechanisms by which young northern deciduous forest ecosystems respond to elevated atmospheric carbon dioxide (CO 2 ) and elevated tropospheric ozone (O 3 ) in a replicated, factorial, field experiment. Soil respiration is the second largest flux of carbon (C) in these ecosystems, and the objective of this study was to understand how soil respiration responded to the experimental treatments as these fast-growing stands of pure aspen and birch + aspen approached maximum leaf area. Rates of soil respiration were typically lowest in the elevated O 3 treatment. Elevated CO 2 significantly stimulated soil respiration (8–26%) compared to the control treatment in both community types over all three growing seasons. In years 6–7 of the experiment, the greatest rates of soil respiration occurred in the interaction treatment (CO 2  + O 3 ), and rates of soil respiration were 15–25% greater in this treatment than in the elevated CO 2 treatment, depending on year and community type. Two of the treatments, elevated CO 2 and elevated CO 2  + O 3 , were fumigated with 13 C-depleted CO 2 , and in these two treatments we used standard isotope mixing models to understand the proportions of new and old C in soil respiration. During the peak of the growing season, C fixed since the initiation of the experiment in 1998 (new C) accounted for 60–80% of total soil respiration. The isotope measurements independently confirmed that more new C was respired from the interaction treatment compared to the elevated CO 2 treatment. A period of low soil moisture late in the 2003 growing season resulted in soil respiration with an isotopic signature 4–6‰ enriched in 13 C compared to sample dates when the percentage soil moisture was higher. In 2004, an extended period of low soil moisture during August and early September, punctuated by a significant rainfall event, resulted in soil respiration that was temporarily 4–6‰ more depleted in 13 C. Up to 50% of the Earth’s forests will see elevated concentrations of both CO 2 and O 3 in the coming decades and these interacting atmospheric trace gases stimulated soil respiration in this study.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/45867/1/442_2006_Article_381.pd

Fungal community composition and metabolism under elevated CO 2 and O 3

Atmospheric CO 2 and O 3 concentrations are increasing due to human activity and both trace gases have the potential to alter C cycling in forest ecosystems. Because soil microorganisms depend on plant litter as a source of energy for metabolism, changes in the amount or the biochemistry of plant litter produced under elevated CO 2 and O 3 could alter microbial community function and composition. Previously, we have observed that elevated CO 2 increased the microbial metabolism of cellulose and chitin, whereas elevated O 3 dampened this response. We hypothesized that this change in metabolism under CO 2 and O 3 enrichment would be accompanied by a concomitant change in fungal community composition. We tested our hypothesis at the free-air CO 2 and O 3 enrichment (FACE) experiment at Rhinelander, Wisconsin, in which Populus tremuloides , Betula papyrifera , and Acer saccharum were grown under factorial CO 2 and O 3 treatments. We employed extracellular enzyme analysis to assay microbial metabolism, phospholipid fatty acid (PLFA) analysis to determine changes in microbial community composition, and polymerase chain reaction–denaturing gradient gel electrophoresis (PCR–DGGE) to analyze the fungal community composition. The activities of 1,4-β-glucosidase (+37%) and 1,4,-β- N -acetylglucosaminidase (+84%) were significantly increased under elevated CO 2 , whereas 1,4-β-glucosidase activity (−25%) was significantly suppressed by elevated O 3 . There was no significant main effect of elevated CO 2 or O 3 on fungal relative abundance, as measured by PLFA. We identified 39 fungal taxonomic units from soil using DGGE, and found that O 3 enrichment significantly altered fungal community composition. We conclude that fungal metabolism is altered under elevated CO 2 and O 3 , and that there was a concomitant change in fungal community composition under elevated O 3 . Thus, changes in plant inputs to soil under elevated CO 2 and O 3 can propagate through the microbial food web to alter the cycling of C in soil.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/47711/1/442_2005_Article_249.pd

Isoprene emission rates under elevated CO(2) and O(3) in two field-grown aspen clones differing in their sensitivity to O(3)

• Isoprene is the most important nonmethane hydrocarbon emitted by plants. The role of isoprene in the plant is not entirely understood but there is evidence that it might have a protective role against different oxidative stresses originating from heat shock and/or exposure to ozone (O3). Thus, plants under stress conditions might benefit by constitutively high or by higher stress-induced isoprene emission rates. • In this study, measurements are presented of isoprene emission from aspen (Populus tremuloides) trees grown in the field for several years under elevated CO2 and O3. Two aspen clones were investigated: the O3-tolerant 271 and the O3-sensitive 42E. • Isoprene emission decreased significantly both under elevated CO2 and under elevated O 3 in the O3-sensitive clone, but only slightly in the O3-tolerant clone. • This study demonstrates that long-term-adapted plants are not able to respond to O3 stress by increasing their isoprene emission rates. However, O3-tolerant clones have the capacity to maintain higher amounts of isoprene emission. It is suggested that tolerance to O3 is explained by a combination of different factors; while the reduction of O3 uptake is likely to be the most important, the capacity to maintain higher amounts of isoprene is an important factor in strengthening this character. © The Authors (2008)