17,143 research outputs found
"Virus hunting" using radial distance weighted discrimination
Motivated by the challenge of using DNA-seq data to identify viruses in human
blood samples, we propose a novel classification algorithm called "Radial
Distance Weighted Discrimination" (or Radial DWD). This classifier is designed
for binary classification, assuming one class is surrounded by the other class
in very diverse radial directions, which is seen to be typical for our virus
detection data. This separation of the 2 classes in multiple radial directions
naturally motivates the development of Radial DWD. While classical machine
learning methods such as the Support Vector Machine and linear Distance
Weighted Discrimination can sometimes give reasonable answers for a given data
set, their generalizability is severely compromised because of the linear
separating boundary. Radial DWD addresses this challenge by using a more
appropriate (in this particular case) spherical separating boundary.
Simulations show that for appropriate radial contexts, this gives much better
generalizability than linear methods, and also much better than conventional
kernel based (nonlinear) Support Vector Machines, because the latter methods
essentially use much of the information in the data for determining the shape
of the separating boundary. The effectiveness of Radial DWD is demonstrated for
real virus detection.Comment: Published at http://dx.doi.org/10.1214/15-AOAS869 in the Annals of
Applied Statistics (http://www.imstat.org/aoas/) by the Institute of
Mathematical Statistics (http://www.imstat.org
Localized Asymmetric Atomic Matter Waves in Two-Component Bose-Einstein Condensates Coupled with Two Photon Microwave Field
We investigate localized atomic matter waves in two-component Bose-Einstein
condensates coupled by the two photon microwave field. Interestingly, the
oscillations of localized atomic matter waves will gradually decay and finally
become non-oscillating behavior even if existing coupling field. In particular,
atom numbers occupied in two different hyperfine spin states will appear
asymmetric occupations after some time evolution.Comment: 4 pages, 4 figure
Anomalous particle-number fluctuations in a three-dimensional interacting Bose-Einstein condensate
The particle-number fluctuations originated from collective excitations are
investigated for a three-dimensional, repulsively interacting Bose-Einstein
condensate (BEC) confined in a harmonic trap. The contribution due to the
quantum depletion of the condensate is calculated and the explicit expression
of the coefficient in the formulas denoting the particle-number fluctuations is
given. The results show that the particle-number fluctuations of the condensate
follow the law and the fluctuations vanish when
temperature approaches to the BEC critical temperature.Comment: RevTex, 4 page
Inverse Magnetoresistance of Molecular Junctions
We present calculations of spin-dependent electron transport through single
organic molecules bridging pairs of iron nanocontacts. We predict the
magnetoresistance of these systems to switch from positive to negative with
increasing applied bias for both conducting and insulating molecules. This
novel inverse magnetoresistance phenomenon is robust, does not depend on the
presence of impurities, and is unique to molecular and atomic nanoscale
magnetic junctions. Its physical origin is identified and its relevance to
experiment and to potential technological applications is discussed.Comment: 5 pages, 3 figures; published version Phys. Rev.
The Impacts of Climate Change on Chinese Agriculture - Phase II National Level Study final report
Superconducting quantum phase transitions tuned by magnetic impurity and magnetic field in ultrathin a-Pb films
Superconducting quantum phase transitions tuned by disorder (d), paramagnetic
impurity (MI) and perpendicular magnetic field (B) have been studied in
homogeneously disordered ultrathin a-Pb films. The MI-tuned transition is
characterized by progressive suppression of the critical temperature to zero
and a continuous transition to a weakly insulating normal state with increasing
MI density. In all important aspects, the d-tuned transition closely resembles
the MI-tuned transition and both appear to be fermionic in nature. The B-tuned
transition is qualitatively different and probably bosonic. In the critical
region it exhibits transport behavior that suggests a B-induced mesoscale phase
separation and presence of Cooper pairing in the insulating state.Comment: 17 pages, 4 figure
Precision Measurement of the Spin-Dependent Asymmetry in the Threshold Region of ^3He(e, e')
We present the first precision measurement of the spin-dependent asymmetry in the threshold region of ^3He(e,e′) at Q^2 values of 0.1 and 0.2(GeV/c)^2. The agreement between the data and nonrelativistic Faddeev calculations which include both final-state interactions and meson-exchange current effects is very good at Q^2 = 0.1(GeV/c)^2, while a small discrepancy at Q^2 = 0.2(GeV/c)^2 is observed
Future cereal production in China: Modelling the interaction of climate change, water availability and socio-economic scenarios. The Impacts of Climate Change on Chinese Agriculture – Phase II Final Report
Phonon Coherence and New Set of Sidebands in Phonon-Assisted Photoluminescence
We investigate excitonic polaron states comprising a local exciton and
phonons in the longitudinal optical (LO) mode by solving the Schr\"{o}dinger
equation. We derive an exact expression for the ground state (GS), which
includes multi-phonon components with coefficients satisfying the Huang-Rhys
factors. The recombination of GS and excited polaron states gives one set of
sidebands in photoluminescence (PL): the multi-phonon components in the GS
produce the Stokes lines and the zero-phonon components in the excited states
produce the anti-Stokes lines. By introducing the mixing of the LO mode and
environal phonon modes, the exciton will also couple with the latter, and the
resultant polaron states result in another set of phonon sidebands. This set
has a zero-phonon line higher and wider than that of the first set due to the
tremendous number of the environal modes. The energy spacing between the
zero-phonon lines of the first and second sets is proved to be the binding
energy of the GS state. The common exciton origin of these two sets can be
further verified by a characteristic Fano lineshape induced by the coherence in
the mixing of the LO and the environal modes.Comment: 5 pages, 3 figures 1 figure (fig. 1) replaced 1 figure (fig. 2)
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