Robust estimation of bacterial cell count from optical density

Optical density (OD) is widely used to estimate the density of cells in liquid culture, but cannot be compared between instruments without a standardized calibration protocol and is challenging to relate to actual cell count. We address this with an interlaboratory study comparing three simple, low-cost, and highly accessible OD calibration protocols across 244 laboratories, applied to eight strains of constitutive GFP-expressing E. coli. Based on our results, we recommend calibrating OD to estimated cell count using serial dilution of silica microspheres, which produces highly precise calibration (95.5% of residuals <1.2-fold), is easily assessed for quality control, also assesses instrument effective linear range, and can be combined with fluorescence calibration to obtain units of Molecules of Equivalent Fluorescein (MEFL) per cell, allowing direct comparison and data fusion with flow cytometry measurements: in our study, fluorescence per cell measurements showed only a 1.07-fold mean difference between plate reader and flow cytometry data

Data-driven mathematical modeling of the effect of particle size distribution on the transitory reaction kinetics of hot metal desulfurization

Abstract The aim of this work was to develop a prediction model for hot metal desulfurization. More specifically, the study aimed at finding a set of explanatory variables that are mandatory in prediction of the kinetics of the lime-based transitory desulfurization reaction and evolution of the sulfur content in the hot metal. The prediction models were built through multivariable analysis of process data and phenomena-based simulations. The model parameters for the suggested model types are identified by solving multivariable least-squares cost functions with suitable solution strategies. One conclusion we arrived at was that in order to accurately predict the rate of desulfurization, it is necessary to know the particle size distribution of the desulfurization reagent. It was also observed that a genetic algorithm can be successfully applied in numerical parameter identification of the proposed model type. It was found that even a very simplistic parameterized expression for the first-order rate constant provides more accurate prediction for the end content of sulfur compared to more complex models, if the data set applied for the modeling contains the adequate information