Inferring DNA sequences from mechanical unzipping: an ideal-case study

We introduce and test a method to predict the sequence of DNA molecules from in silico unzipping experiments. The method is based on Bayesian inference and on the Viterbi decoding algorithm. The probability of misprediction decreases exponentially with the number of unzippings, with a decay rate depending on the applied force and the sequence content.Comment: Source as TeX file with ps figure

The analytic structure of heavy quark propagators

The renormalised quark Dyson-Schwinger equation is studied in the limit of the renormalised current heavy quark mass m_R --> infinity. We are particularly interested in the analytic pole structure of the heavy quark propagator in the complex momentum plane. Approximations in which the quark-gluon vertex is modelled by either the bare vertex or the Ball-Chiu Ansatz, and the Landau gauge gluon propagator takes either a gaussian form or a gaussian form with an ultraviolet asymptotic tail are used.Comment: 21 pages Latex and 5 postscript figures. The original version of this paper has been considerably extended to include a formalism dealing with the renormalised heavy quark Dyson-Schwinger equation and uses a more realistic Ansatz for the gluon propagator

Morphological Classification of Galaxies by Shapelet Decomposition in the Sloan Digital Sky Survey II: Multiwavelength Classification

We describe the application of the `shapelet' linear decomposition of galaxy images to multi-wavelength morphological classification using the $u,g,r,i,$ and $z$-band images of 1519 galaxies from the Sloan Digital Sky Survey. We utilize elliptical shapelets to remove to first-order the effect of inclination on morphology. After decomposing the galaxies we perform a principal component analysis on the shapelet coefficients to reduce the dimensionality of the spectral morphological parameter space. We give a description of each of the first ten principal component's contribution to a galaxy's spectral morphology. We find that galaxies of different broad Hubble type separate cleanly in the principal component space. We apply a mixture of Gaussians model to the 2-dimensional space spanned by the first two principal components and use the results as a basis for classification. Using the mixture model, we separate galaxies into three classes and give a description of each class's physical and morphological properties. We find that the two dominant mixture model classes correspond to early and late type galaxies, respectively. The third class has, on average, a blue, extended core surrounded by a faint red halo, and typically exhibits some asymmetry. We compare our method to a simple cut on $u-r$ color and find the shapelet method to be superior in separating galaxies. Furthermore, we find evidence that the $u-r=2.22$ decision boundary may not be optimal for separation between early and late type galaxies, and suggest that the optimal cut may be $u-r \sim 2.4$.Comment: 42 pages, 18 figs, revised version in press at AJ. Some modification to the technique, more discussion, addition/deletion/modification of several figures, color figures have been added. A high resolution version may be obtained at http://bllac.as.arizona.edu/~bkelly/shapelets/shapelets_ugriz.ps.g

A study of 15N14N isotopic exchange over cobalt molybdenum nitrides

The 14N/15N isotopic exchange pathways over Co3Mo3N, a material of interest as an ammonia synthesis catalyst and for the development of nitrogen transfer reactions, have been investigated. Both the homomolecular and heterolytic exchange processes have been studied, and it has been shown that lattice nitrogen species are exchangeable. The exchange behavior was found to be a strong function of pretreatment with ca. 25% of lattice N atoms being exchanged after 40 min at 600 °C after N2 pretreatment at 700 °C compared to only 6% following similar Ar pretreatment. This observation, for which the potential contribution of adsorbed N species can be discounted, is significant in terms of the application of this material. In the case of the Co6Mo6N phase, regeneration to Co3Mo3N under 15N2 at 600 °C occurs concurrently with 14N15N formation. These observations demonstrate the reactivity of nitrogen in the Co–Mo–N system to be a strong function of pretreatment and worthy of further consideration

Radio Emission from GRO J1655-40 during the 1994 Jet Ejection Episodes

We report multifrequency radio observations of GRO J1655-40 obtained with the Australia Telescope Compact Array, the Molonglo Observatory Synthesis Telescope and the Hartebeesthoek Radio Astronomy Observatory at the time of the major hard X-ray and radio outbursts in 1994 August-September. The radio emission reached levels of the order of a few Jy and was found to be linearly polarized by up to 10%, indicating a synchrotron origin. The light curves are in good agreement with those measured with the VLA, but our closer time sampling has revealed two new short-lived events and significant deviations from a simple exponential decay. The polarization data show that the magnetic field is well ordered and aligned at right angles to the radio jets for most of the monitoring period. The time evolution of the polarization cannot be explained solely in terms of a simple synchrotron bubble model, and we invoke a hybrid `core-lobe' model with a core which contributes both synchrotron and free-free emission and `lobes' which are classical synchrotron emitters.Comment: 36 pages, 5 tables, 9 figures; accepted for publication in Ap

Chaotic temperature dependence at zero temperature

We present a class of examples of nearest-neighbour, boubded-spin models, in which the low-temperature Gibbs measures do not converge as the temperature is lowered to zero, in any dimension

Low-temperature, high-density magneto-optical trapping of potassium using the open 4S-5P transition at 405 nm

We report the laser cooling and trapping of neutral potassium on an open transition. Fermionic 40K is captured using a magneto-optical trap (MOT) on the closed 4S-4P transition at 767 nm and then transferred, with unit efficiency, to a MOT on the open 4S-5P transition at 405 nm. Because the 5P state has a smaller line width than the 4P state, the Doppler limit is reduced. We observe temperatures as low as 63(6) microkelvin, the coldest potassium MOT reported to date. The density of trapped atoms also increases, due to reduced temperature and reduced expulsive light forces. We measure a two-body loss coefficient of 2 x 10^-10 cm^3/s, and estimate an upper bound of 8x10^-18 cm^2 for the ionization cross section of the 5P state at 405 nm. The combined temperature and density improvement in the 405 nm MOT is a twenty-fold increase in phase space density over our 767 nm MOT, showing enhanced pre-cooling for quantum gas experiments. A qualitatively similar enhancement is observed in a 405 nm MOT of bosonic 41K.Comment: 8 pages, 8 figures, 1 tabl