Statistical Mechanics of Elastica on Plane as a Model of Supercoiled DNA-Origin of the MKdV hierarchy-

In this article, I have investigated statistical mechanics of a non-stretched elastica in two dimensional space using path integral method. In the calculation, the MKdV hierarchy naturally appeared as the equations including the temperature fluctuation.I have classified the moduli of the closed elastica in heat bath and summed the Boltzmann weight with the thermalfluctuation over the moduli. Due to the bilinearity of the energy functional,I have obtained its exact partition function.By investigation of the system,I conjectured that an expectation value at a critical point of this system obeys the Painlev\'e equation of the first kind and its related equations extended by the KdV hierarchy.Furthermore I also commented onthe relation between the MKdV hierarchy and BRS transformationin this system.Comment: AMS-Tex Us

Hyperelliptic Solutions of KdV and KP equations: Reevaluation of Baker's Study on Hyperelliptic Sigma Functions

Explicit function forms of hyperelliptic solutions of Korteweg-de Vries (KdV) and \break Kadomtsev-Petviashvili (KP) equations were constructed for a given curve $y^2 = f(x)$ whose genus is three. This study was based upon the fact that about one hundred years ago (Acta Math. (1903) {\bf{27}}, 135-156), H. F. Baker essentially derived KdV hierarchy and KP equation by using bilinear differential operator ${\bold{D}}$, identities of Pfaffians, symmetric functions, hyperelliptic $\sigma$-function and $\wp$-functions; $\wp_{\mu \nu} = -\partial_\mu \partial_\nu \log \sigma$ $= - ({\bold{D}}_\mu {\bold{D}}_\nu \sigma \sigma)/2\sigma^2$. The connection between his theory and the modern soliton theory was also discussed.Comment: AMS-Tex, 12 page

Parametrically controlling solitary wave dynamics in modified Kortweg-de Vries equation

We demonstrate the control of solitary wave dynamics of modified Kortweg-de Vries (MKdV) equation through the temporal variations of the distributed coefficients. This is explicated through exact cnoidal wave and localized soliton solutions of the MKdV equation with variable coefficients. The solitons can be accelerated and their propagation can be manipulated by suitable variations of the above parameters. In sharp contrast with nonlinear Schr\"{o}dinger equation, the soliton amplitude and widths are time independent.Comment: 4 pages, 5 eps figure

Power-Gating Technique for Network-on-Chip Buffers

A new approach to reducing leakage power in network-on-chip buffers is presented. The non-uniformity of buffer utilisation is leveraged across the network and power-gating is applied to scarcely utilised buffers. Instead of turning-off the buffers completely, a buffer portion is kept turned-on. This design choice has a significant performance benefit because the buffer is always able to receive network packets. Design aspects and trade-offs in a 45 nm CMOS technology are discussed and results obtained over video application benchmarks are presented. It is shown that it is possible to reduce buffer leakage by 40% without performance penalt

Abelian functions associated with a cyclic tetragonal curve of genus six

We develop the theory of Abelian functions defined using a tetragonal curve of genus six, discussing in detail the cyclic curve y^4 = x^5 + λ[4]x^4 + λ[3]x^3 + λ[2]x^2 + λ[1]x + λ[0]. We construct Abelian functions using the multivariate sigma-function associated with the curve, generalizing the theory of theWeierstrass℘-function. We demonstrate that such functions can give a solution to the KP-equation, outlining how a general class of solutions could be generated using a wider class of curves. We also present the associated partial differential equations satisfied by the functions, the solution of the Jacobi inversion problem, a power series expansion for σ(u) and a new addition formula

New variables of separation for particular case of the Kowalevski top

We discuss the polynomial bi-Hamiltonian structures for the Kowalevski top in special case of zero square integral. An explicit procedure to find variables of separation and separation relations is considered in detail.Comment: 11 pages, LaTeX with Ams font

The Effect of Mobile Element IS10 on Experimental Regulatory Evolution in Escherichia coli

Mobile genetic elements are widespread in bacteria, where they cause several kinds of mutations. Although their effects are on the whole negative, rare beneficial mutations caused by insertion sequence elements are frequently selected in some experimental evolution systems. For example, in earlier work, we found that strains of Escherichia coli that lack the sigma factor RpoS adapt to a high-osmolarity environment by the insertion of element IS10 into the promoter of the otsBA operon, rewiring expression from RpoS dependent to RpoS independent. We wished to determine how the presence of IS10 in the genome of this strain shaped the evolutionary outcome. IS10 could influence the outcome by causing mutations that confer adaptive phenotypes that cannot be achieved by strains without the element. Alternatively, IS10 could influence evolution by increasing the rate of appearance of certain classes of beneficial mutations even if they are no better than those that could be achieved by a strain without the element. We found that populations evolved from an IS10-free strain did not upregulate otsBA. An otsBA-lacZY fusion facilitated the recovery of a number of mutations that upregulate otsB without involving IS10 and found that two caused greater fitness increases than IS10 insertion, implying that evolution could have upregulated otsBA in the IS10-free strain. Finally, we demonstrate that there is epistasis between the IS10 insertion into the otsBA promoter and the other adaptive mutations, implying that introduction of IS10 into the otsBA promoter may alter the trajectory of adaptive evolution. We conclude that IS10 exerts its effect not by creating adaptive phenotypes that could not otherwise occur but by increasing the rate of appearance of certain adaptive mutations

Annual variation in the levels of transcripts of sex-specific genes in the mantle of the common mussel, Mytilus edulis

Mytilus species are used as sentinels for the assessment of environmental health but sex or stage in the reproduction cycle is rarely considered even though both parameters are likely to influence responses to pollution. We have validated the use of a qPCR assay for sex identification and related the levels of transcripts to the reproductive cycle. A temporal study of mantle of Mytilus edulis found transcripts of male-specific vitelline coat lysin (VCL) and female-specific vitelline envelope receptor for lysin (VERL) could identify sex over a complete year. The levels of VCL/VERL were proportional to the numbers of sperm/ova and are indicative of the stage of the reproductive cycle. Maximal levels of VCL and VERL were found in February 2009 declining to minima between July - August before increasing and re-attaining a peak in February 2010. Water temperature may influence these transitions since they coincide with minimal water temperature in February and maximal temperature in August. An identical pattern of variation was found for a cryptic female-specific transcript (H5) but a very different pattern was observed for oestrogen receptor 2 (ER2). ER2 varied in a sex-specific way with male > female for most of the cycle, with a female maxima in July and a male maxima in December. Using artificially spawned animals, the transcripts for VCL, VERL and H5 were shown to be present in gametes and thus their disappearance from mantle is indicative of spawning. VCL and VERL are present at equivalent levels in February and July-August but during gametogenesis (August to January) and spawning (March to June) VCL is present at lower relative amounts than VERL. This may indicate sex-specific control mechanisms for these processes and highlight a potential pressure point leading to reduced reproductive output if environmental factors cause asynchrony to gamete maturation or release