From the chiral magnetic wave to the charge dependence of elliptic flow

The quark-gluon plasma formed in heavy ion collisions contains charged chiral fermions evolving in an external magnetic field. At finite density of electric charge or baryon number (resulting either from nuclear stopping or from fluctuations), the triangle anomaly induces in the plasma the Chiral Magnetic Wave (CMW). The CMW first induces a separation of the right and left chiral charges along the magnetic field; the resulting dipolar axial charge density in turn induces the oppositely directed vector charge currents leading to an electric quadrupole moment of the quark-gluon plasma. Boosted by the strong collective flow, the electric quadrupole moment translates into the charge dependence of the elliptic flow coefficients, so that $v_2(\pi^+) < v_2(\pi^-)$ (at positive net charge). Using the latest quantitative simulations of the produced magnetic field and solving the CMW equation, we make further quantitative estimates of the produced $v_2$ splitting and its centrality dependence. We compare the results with the available experimental data.Comment: Contains 12 pages, 6 figures, written as a proceeding for the talk of Y. Burnier at the conference "P and CP-odd Effects in Hot and Dense Matter 2012" held in BN

Can the Standard Model CP violation near the W-bags explain the cosmological baryonic asymmetry?

In the scenario of cold electroweak baryogenesis, oscillations of the Higgs field lead to metastable domains of unbroken phase where the Higgs field nearly vanishes. Those domains have also been identified with the $W-t-\bar{t}$ bags, a non-topological soliton made of large number ($\sim 1000$) of gauge quanta and heavy (top and anti-top) quarks. As real-time numerical studies had shown, sphalerons (topological transition events violating the baryon number) occur only inside those bags. In this work we estimate the amount of CP violation in this scenario coming from the Standard Model, via the Cabibbo-Kobayashi-Maskawa (CKM) quark mixing matrix, resulting in top-minus-antitop difference of the population in the bags. Since these tops/anti-tops are "recycled" by sphalerons, this population difference leads directly to the baryonic asymmetry of the Universe. We look at the effect appearing in the 4th order in weak $W$ diagrams describing interference of different quark flavor contributions. We found that there are multiple cancellations of diagrams and clearly sign-definite effect appears only in the 6th order expansion over flavor-dependent phases. We then estimate contributions to these diagrams in which weak interaction occurs (i) inside, (ii) near and (iii) far from the $W-t-\bar{t}$ b-bags, optimizing the contributions in each of them. We conclude that the second ("near") scenario is the dominant one, producing CP violation of the order of $10^{-10}$, in our crude estimates. Together with the baryon violation rate of about $10^{-2}$, previously demonstrated for this scenario, it puts the resulting asymmetry close to what is needed to explain the observed baryonic asymmetry in the Universe. Our answer also has a definite sign, which apparently seems to be the correct one.Comment: 7 pages, 2 figure

Chiral magnetic wave at finite baryon density and the electric quadrupole moment of quark-gluon plasma in heavy ion collisions

Chiral Magnetic Wave (CMW) is a gapless collective excitation of quark-gluon plasma in the presence of external magnetic field that stems from the interplay of Chiral Magnetic (CME) and Chiral Separation Effects (CSE); it is composed by the waves of the electric and chiral charge densities coupled by the axial anomaly. We consider CMW at finite baryon density and find that it induces the electric quadrupole moment of the quark-gluon plasma produced in heavy ion collisions: the "poles" of the produced fireball (pointing outside of the reaction plane) acquire additional positive electric charge, and the "equator" acquires additional negative charge. We point out that this electric quadrupole deformation lifts the degeneracy between the elliptic flows of positive and negative pions leading to $v_2(\pi^+) < v_2(\pi^-)$, and estimate the magnitude of the effect.Comment: 4 pages, 3 figure

Towards flavour diffusion coefficient and electrical conductivity without ultraviolet contamination

By subtracting from a recent lattice measurement of the thermal vector-current correlator the known 5-loop vacuum contribution, we demonstrate that the remainder is small and shows no visible short-distance divergence. It can therefore in principle be subjected to model-independent analytic continuation. Testing a particular implementation, we obtain estimates for the flavour-diffusion coefficient (2 pi T D \gsim 0.8) and electrical conductivity which are significantly smaller than previous results. Although systematic errors remain beyond control at present, some aspects of our approach could be of a wider applicability.Comment: 7 pages. v2: clarifications added, published versio

Colour-electric spectral function at next-to-leading order

The spectral function related to the correlator of two colour-electric fields along a Polyakov loop determines the momentum diffusion coefficient of a heavy quark near rest with respect to a heat bath. We compute this spectral function at next-to-leading order, O(alpha_s^2), in the weak-coupling expansion. The high-frequency part of our result (omega >> T), which is shown to be temperature-independent, is accurately determined thanks to asymptotic freedom; the low-frequency part of our result (omega << T), in which Hard Thermal Loop resummation is needed in order to cure infrared divergences, agrees with a previously determined expression. Our result may help to calibrate the overall normalization of a lattice-extracted spectral function in a perturbative frequency domain T << omega << 1/a, paving the way for a non-perturbative estimate of the momentum diffusion coefficient at omega -> 0. We also evaluate the colour-electric Euclidean correlator, which could be directly compared with lattice simulations. As an aside we determine the Euclidean correlator in the lattice strong-coupling expansion, showing that through a limiting procedure it can in principle be defined also in the confined phase of pure Yang-Mills theory, even if a practical measurement could be very noisy there.Comment: 38 page

Transcription-induced supercoiling explains formation of self-interacting chromatin domains in S. pombe.

The question of how self-interacting chromatin domains in interphase chromosomes are structured and generated dominates current discussions on eukaryotic chromosomes. Numerical simulations using standard polymer models have been helpful in testing the validity of various models of chromosome organization. Experimental contact maps can be compared with simulated contact maps and thus verify how good is the model. With increasing resolution of experimental contact maps, it became apparent though that active processes need to be introduced into models to recapitulate the experimental data. Since transcribing RNA polymerases are very strong molecular motors that induce axial rotation of transcribed DNA, we present here models that include such rotational motors. We also include into our models swivels and sites for intersegmental passages that account for action of DNA topoisomerases releasing torsional stress. Using these elements in our models, we show that transcription-induced supercoiling generated in the regions with divergent-transcription and supercoiling relaxation occurring between these regions are sufficient to explain formation of self-interacting chromatin domains in chromosomes of fission yeast (S. pombe)

Erratum to: A new prescription model for regional citrate anticoagulation in therapeutic plasma exchanges.

BACKGROUND: Regional citrate anticoagulation (RCA) is proposed for various extracorporeal purification techniques to overcome the risk of bleeding that might result from systemic anticoagulation. Yet, no individualized treatment protocol has been proposed for therapeutic plasma exchange (TPE) so far. The objective of this study was to assess the determinants of blood citrate concentration needed and to develop an individualized RCA protocol useful for clinical practice. METHODS: The study population included 14 patients who underwent a total of 47 TPE sessions. Citrate was infused pre-plasmafilter. Post-plasmafilter and systemic plasma ionized calcium concentrations were measured at standardized time intervals. An algorithm was proposed for the supplementation of calcium. During the discovery phase, citrate was infused at a fixed starting rate, and adapted accordingly to obtained post-plasmafilter ionized calcium levels. Using a mathematical approach, an algorithm was thereafter developed for individualized prescriptions of citrate. RESULTS: Pre-treatment values of hematocrit and plasma ionized calcium were the main determinants of the required rate of citrate infusion. These can be integrated into a final equation enabling to individualize the prescription. A prefilter ionized calcium concentration between 0.24 and 0.33 mmol/l prevented coagulation of the extracorporeal circuit. Significant hypocalcemia occurred in 8.5% of treatments. There were no significant acid–base disturbances. CONCLUSION: We propose a new protocol, which enables for the first time to individualize the prescription of regional citrate anticoagulation during TPE, in an efficient manner. The immediately obtained regional anticoagulation protects against both the risk of coagulation of the membrane and the exposure to an excess of citrate. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12882-017-0494-9) contains supplementary material, which is available to authorized users

Effects of physiological self-crowding of DNA on shape and biological properties of DNA molecules with various levels of supercoiling.

DNA in bacterial chromosomes and bacterial plasmids is supercoiled. DNA supercoiling is essential for DNA replication and gene regulation. However, the density of supercoiling in vivo is circa twice smaller than in deproteinized DNA molecules isolated from bacteria. What are then the specific advantages of reduced supercoiling density that is maintained in vivo? Using Brownian dynamics simulations and atomic force microscopy we show here that thanks to physiological DNA-DNA crowding DNA molecules with reduced supercoiling density are still sufficiently supercoiled to stimulate interaction between cis-regulatory elements. On the other hand, weak supercoiling permits DNA molecules to modulate their overall shape in response to physiological changes in DNA crowding. This plasticity of DNA shapes may have regulatory role and be important for the postreplicative spontaneous segregation of bacterial chromosomes

A new prescription model for regional citrate anticoagulation in therapeutic plasma exchanges.

Regional citrate anticoagulation (RCA) is proposed for various extracorporeal purification techniques to overcome the risk of bleeding that might result from systemic anticoagulation. Yet, no individualized treatment protocol has been proposed for therapeutic plasma exchange (TPE) so far. The objective of this study was to assess the determinants of blood citrate concentration needed and to develop an individualized RCA protocol useful for clinical practice. The study population included 14 patients who underwent a total of 47 TPE sessions. Citrate was infused pre-plasmafilter. Post-plasmafilter and systemic plasma ionized calcium concentrations were measured at standardized time intervals. An algorithm was proposed for the supplementation of calcium. During the discovery phase, citrate was infused at a fixed starting rate, and adapted accordingly to obtained post-plasmafilter ionized calcium levels. Using a mathematical approach, an algorithm was thereafter developed for individualized prescriptions of citrate. Pre-treatment values of hematocrit and plasma ionized calcium were the main determinants of the required rate of citrate infusion. These can be integrated into a final equation enabling to individualize the prescription. A prefilter ionized calcium concentration between 0.24 and 0.33 mmol/l prevented coagulation of the extracorporeal circuit. Significant hypocalcemia occurred in 8.5% of treatments. There were no significant acid-base disturbances. We propose a new protocol, which enables for the first time to individualize the prescription of regional citrate anticoagulation during TPE, in an efficient manner. The immediately obtained regional anticoagulation protects against both the risk of coagulation of the membrane and the exposure to an excess of citrate

On electroweak baryogenesis in the littlest Higgs model with T parity

We study electroweak baryogenesis within the framework of the littlest Higgs model with T parity. This model has shown characteristics of a strong first-order electroweak phase transition, which is conducive to baryogenesis in the early Universe. In the T parity symmetric theory, there are two gauge sectors, viz., the T-even and the T-odd ones. We observe that the effect of the T-parity symmetric interactions between the T-odd and the T-even gauge bosons on gauge-higgs energy functional is quite small, so that these two sectors can be taken to be independent. The T-even gauge bosons behave like the Standard Model gauge bosons, whereas the T-odd ones are instrumental in stabilizing the Higgs mass. For the T-odd gauge bosons in the symmetric and asymmetric phases and for the T-even gauge bosons in the asymmetric phase, we obtain, using the formalism of Arnold and McLerran, very small values of the ratio, (Baryon number violation rate/Universe expansion rate). We observe that this result, in conjunction with the scenario of inverse phase transition in the present work and the value of the ratio obtained from the lattice result of sphaleron transition rate in the symmetric phase, can provide us with a plausible baryogenesis scenario.Comment: 13 pages, 2 figures, published version, references modifie