13 research outputs found
Fast Autofocusing using Tiny Transformer Networks for Digital Holographic Microscopy
The numerical wavefront backpropagation principle of digital holography
confers unique extended focus capabilities, without mechanical displacements
along z-axis. However, the determination of the correct focusing distance is a
non-trivial and time consuming issue. A deep learning (DL) solution is proposed
to cast the autofocusing as a regression problem and tested over both
experimental and simulated holograms. Single wavelength digital holograms were
recorded by a Digital Holographic Microscope (DHM) with a 10
microscope objective from a patterned target moving in 3D over an axial range
of 92 m. Tiny DL models are proposed and compared such as a tiny Vision
Transformer (TViT), tiny VGG16 (TVGG) and a tiny Swin-Transfomer (TSwinT). The
experiments show that the predicted focusing distance is
accurately inferred with an accuracy of 1.2 m in average in comparison
with the DHM depth of field of 15 m. Numerical simulations show that all
tiny models give the with an error below 0.3 m. Such
a prospect would significantly improve the current capabilities of computer
vision position sensing in applications such as 3D microscopy for life sciences
or micro-robotics. Moreover, all models reach state of the art inference time
on CPU, less than 25 ms per inference
Convolutional Neural Network (CNN) vs Vision Transformer (ViT) for Digital Holography
International audienceIn Digital Holography (DH), it is crucial to extract the object distance from a hologram in order to reconstruct its amplitude and phase. This step is called auto-focusing and it is conventionally solved by first reconstructing a stack of images and then by sharpening each reconstructed image using a focus metric such as entropy or variance. The distance corresponding to the sharpest image is considered the focal position. This approach, while effective, is computationally demanding and time-consuming. In this paper, the determination of the distance is performed by Deep Learning (DL). Two deep learning (DL) achitectures are compared: Convolutional Neural Network (CNN) and Vision transformer (ViT). ViT and CNN are used to cope with the problem of auto-focusing as a classification problem. Compared to a first attempt [1] in which the distance between two consecutive classes was 100μm, our proposal allows us to drastically reduce this distance to 1μm. Moreover, ViT reaches similar accuracy and is more robust than CNN
Characterization of DNA bio-bonds for meso-scale self-assembly
International audienc
Digital Holographic Microscopy applied to 3D Computer Microvision by using Deep Neural Networks
International audienc
Fast autofocusing using tiny transformer networks for digital holographic microscopy
International audienc
Computer microvision-based precision motion measurement by digital holographic microscopy and deep transformer neural networks
International audienceAn area of particular importance in developing advanced imaging techniques concerns 3D motion measurement in small-scale mechatronics and automated microscopy. One major drawback is related to complex motion measurement with 6 degrees of freedom. In the proposed work, the extraction of unknown metrics such as focusing distance, in plane and out-of-plane positioning from digital holograms is performed including real‐time constraints. This work explores extended computer micro-vision capabilities offered by combining digital holographic microscopy (DHM) and last generation of deep learning algorithms such as Vision Transformer (ViT) networks. Our experiments show that the reconstruction in-focus distance can be predicted in DHM with a high accuracy using tiny modified architectures of deep ViT networks and convolutional neural networks (CNN). We compare ViT and Tiny ViT models with deep CNN usually used in digital holography such as VGG16, LeNet and AlexNet
Extended machine vision-control capabilities using digital holography and transformer neural networks
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Computer microvision-based precision motion measurement by digital holographic microscopy and deep transformer neural networks
International audienceAn area of particular importance in developing advanced imaging techniques concerns 3D motion measurement in small-scale mechatronics and automated microscopy. One major drawback is related to complex motion measurement with 6 degrees of freedom. In the proposed work, the extraction of unknown metrics such as focusing distance, in plane and out-of-plane positioning from digital holograms is performed including real‐time constraints. This work explores extended computer micro-vision capabilities offered by combining digital holographic microscopy (DHM) and last generation of deep learning algorithms such as Vision Transformer (ViT) networks. Our experiments show that the reconstruction in-focus distance can be predicted in DHM with a high accuracy using tiny modified architectures of deep ViT networks and convolutional neural networks (CNN). We compare ViT and Tiny ViT models with deep CNN usually used in digital holography such as VGG16, LeNet and AlexNet
Self-autofocusing using deep learning for digital holography and applied to position measurement
International audienceThe numerical wavefront backpropagation principle of digital holography (DH) confers unique extended focus capabilities. However, the determination of the correct focus distance is a difficult and time consuming problem. To cope with this problem, a deep learning solution is proposed to cast the auto-focusing as a classification problem. The experiments show that a good accuracy (1-3 μm) can be reached for a set of holograms ranging on a distance of 10 μm and using a 10x microscope objective
Extended autofocusing capabilities in digital holographic microscopy with transformer neural networks
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