Sediment budget in a deep-sea core from the central equatorial Pacific

Stratigraphic, mineralogic, chemical, and geochronologic measurements on a core from 8°20\u27N, 153°W show that sediment has been accumulating at a rate of 160 g/cm2/106 years. Of this, 125 g is fresh Quaternary sediment while the remainder is lower and middle Tertiary material eroded from nearby outcrops...

Early evolution of the biotin-dependent carboxylase family

<p>Abstract</p> <p>Background</p> <p>Biotin-dependent carboxylases are a diverse family of carboxylating enzymes widespread in the three domains of life, and thus thought to be very ancient. This family includes enzymes that carboxylate acetyl-CoA, propionyl-CoA, methylcrotonyl-CoA, geranyl-CoA, acyl-CoA, pyruvate and urea. They share a common catalytic mechanism involving a biotin carboxylase domain, which fixes a CO₂molecule on a biotin carboxyl carrier peptide, and a carboxyl transferase domain, which transfers the CO₂moiety to the specific substrate of each enzyme. Despite this overall similarity, biotin-dependent carboxylases from the three domains of life carrying their reaction on different substrates adopt very diverse protein domain arrangements. This has made difficult the resolution of their evolutionary history up to now.</p> <p>Results</p> <p>Taking advantage of the availability of a large amount of genomic data, we have carried out phylogenomic analyses to get new insights on the ancient evolution of the biotin-dependent carboxylases. This allowed us to infer the set of enzymes present in the last common ancestor of each domain of life and in the last common ancestor of all living organisms (the cenancestor). Our results suggest that the last common archaeal ancestor had two biotin-dependent carboxylases, whereas the last common bacterial ancestor had three. One of these biotin-dependent carboxylases ancestral to Bacteria most likely belonged to a large family, the CoA-bearing-substrate carboxylases, that we define here according to protein domain composition and phylogenetic analysis. Eukaryotes most likely acquired their biotin-dependent carboxylases through the mitochondrial and plastid endosymbioses as well as from other unknown bacterial donors. Finally, phylogenetic analyses support previous suggestions about the existence of an ancient bifunctional biotin-protein ligase bound to a regulatory transcription factor.</p> <p>Conclusions</p> <p>The most parsimonious scenario for the early evolution of the biotin-dependent carboxylases, supported by the study of protein domain composition and phylogenomic analyses, entails that the cenancestor possessed two different carboxylases able to carry out the specific carboxylation of pyruvate and the non-specific carboxylation of several CoA-bearing substrates, respectively. These enzymes may have been able to participate in very diverse metabolic pathways in the cenancestor, such as in ancestral versions of fatty acid biosynthesis, anaplerosis, gluconeogenesis and the autotrophic fixation of CO₂.</p

Chemical composition of East Pacific Rise basal sediments

Analyses by atomic absorption spectrophotometry and spark-source mass spectrography of 25 basal metalliferous sediment units from widely spaced locations on the western flank of the East Pacific Rise show that the deposits are enriched relative to normal pelagic sediment in Fe, Mn, Ni, Cu, Pb, Zn, and many trace elements. The elements are partitioned differently between the various mineralogic constituents of the sediment, with Fe and Mn largely in separate phases and many of the remaining elements primarily associated with reducible ferromanganese oxide minerals but also with iron minerals and other phases. Most of the iron in the deposits is probably of volcanic origin, and much of the manganese and minor elements is derived from sea water. The bulk composition of the deposits varies with age; this is thought to be due to variations in the incidence of volcanic activity at the East Pacific Rise crest where the deposits were formed

Description and composition of Manganese deposits from the Mid-Atlantic Ridge

Iron-rich sediments similar to those forming on other active mid-oceanic ridges have been found in the Median Valley of the Mid-Atlantic Ridge near 45 °N. The sediments are enriched in arsenic and mercury, and are thought to have formed largely as a result of submarine hydrothermal activity associated with the generation of new ocean floor at the ridge crest

Chemical analysis of manganese nodules from th Atlantic

Atlantic manganese nodules and encrustations are most abundant in areas of slow sedimentation beneath the carbonate compensation depth or where currents inhibit sediment accumulation. They principally contain the minerals todorokite and ?MnO2, which are selectively concentrated into nodules and encrustations, respectively, and which show an environmental differentiation thought to be related to redox potentials. Excluding the continental margins, todorokite is most abundant in deepwater deposits. Mineralogical differences between nodules influence their chemical compositions, Ni and Cu being most abundant in samples rich in todorokite and Co in those rich in ?MnO2. Chemically, the deposits differ from those in other major oceans principally in their higher Fe and lower Ni and Cu contents, which may be due to higher rates of supply of Fe to the deposits than those in the other oceans. Regional variations occur in the concentrations of several elements, Mn, Ni, and Cu being enriched in deepwater deposits from areas of slow sedimentation between the Mid-Atlantic Ridge and the continental margins and Co being enriched in some deposits from elevated localities. These variations are thought to be due to variation in the sources of the elements concerned and in the depositional environment

(Table 2, page 607) Composition of manganese nodules in cores from Leg 16, Deep Sea Drilling Project

Buried manganese nodules or encrustations were encountered at five drill sites of Leg 16. Surface nodules were also sampled at two sites. With few exceptions, nodules within any one drill hole are fairly uniform in composition and are similar in composition to samples obtained previously from the eastern equatorial Pacific. Geochemical and paleontological evidence suggests that at least one of the buried samples was in situ when found and that at least one other was not. The remaining nodules may have fallen from the sediment surface to the positions in which they were found during the drilling process