Trasncriptome assembly results.

<p>Trasncriptome assembly results.</p

Expression profiles of Falster and Veyo transcripts involved in fructan biosynthesis.

<p>Falster transcripts are depicted in blue, Veyo transcripts in red. The <i>x</i> axis presents the sample collection time points: I =  autumn conditions, before the start of vernalization; II = 2 days of vernalization; III = 4 weeks of vernalization; IV = 9 weeks of vernalization; V = 7 days of long day conditions. The <i>y</i> axis corresponds to the variance stabilized data from DESeq. The blue background illustrates vernalization treatment, the pink background illustrates long day conditions. Figure adapted from the Plant Metabolic Pathways database (<a href="http://www.plantcyc.org/" target="_blank">http://www.plantcyc.org/</a>).</p

K-means clustering analysis of transcripts differentially expressed in Falster enriched meristem samples.

<p>K = 25 clusters. The <i>x</i> axis presents the sample collection time points: I = 9 weeks of vernalization; II = 1 long day; III = 7 days of long day conditions. The <i>y</i> axis corresponds to the variance stabilized data from DESeq. The blue background illustrates vernalization treatment, the pink background illustrates long day conditions.</p

Expression profiles of Falster and Veyo transcripts involved in fructan degradation.

<p>Falster transcripts are depicted in blue, Veyo transcripts in red. The <i>x</i> axis presents the sample collection time points: I =  autumn conditions, before the start of vernalization; II = 2 days of vernalization; III = 4 weeks of vernalization; IV = 9 weeks of vernalization; V = 7 days of long day conditions. The <i>y</i> axis corresponds to the variance stabilized data from DESeq. The blue background illustrates vernalization treatment, the pink background illustrates long day conditions. Figure adapted from the Plant Metabolic Pathways database (<a href="http://www.plantcyc.org/" target="_blank">http://www.plantcyc.org/</a>).</p

K-means clustering analysis of transcripts differentially expressed in Veyo enriched meristem samples.

<p>K = 25 clusters. The <i>x</i> axis presents the sample collection time points: I = 9 weeks of vernalization; II = 1 long day; III = 7 days of long day conditions. The <i>y</i> axis corresponds to the variance stabilized data from DESeq. The blue background illustrates vernalization treatment, the pink background illustrates long day conditions.</p

K-means clustering analysis of transcripts differentially expressed in Veyo leaf samples.

<p>K = 50 clusters. The <i>x</i> axis presents the sample collection time points: I =  autumn conditions, before the start of vernalization; II = 2 days of vernalization; III = 4 weeks of vernalization; IV = 9 weeks of vernalization; V = 7 days of long day conditions. The <i>y</i> axis corresponds to the variance stabilized data from DESeq. The blue background illustrates vernalization treatment, the pink background illustrates long day conditions.</p

Expression profiles of Falster and Veyo transcripts involved in trehalose-6-phosphate synthesis and degradation.

<p>Falster transcripts are depicted in blue, Veyo transcripts in red. The <i>x</i> axis presents the sample collection time points: I =  autumn conditions, before the start of vernalization; II = 2 days of vernalization; III = 4 weeks of vernalization; IV = 9 weeks of vernalization; V = 7 days of long day conditions. The <i>y</i> axis corresponds to the variance stabilized data from DESeq. The blue background illustrates vernalization treatment, the pink background illustrates long day conditions. Figure adapted from the Plant Metabolic Pathways database (<a href="http://www.plantcyc.org/" target="_blank">http://www.plantcyc.org/</a>).</p

Multidimensional scaling plots of the Falster and Veyo transcriptome assemblies.

<p>The first dimension illustrates grouping based on sample type. The second dimension illustrates grouping based on the sample collection time points (stage of induction). The numbers illustrate the samples as follows: 1 =  leaf samples collected before the start of vernalization; 2 =  leaf samples collected after two days of vernalization; 3 =  leaf samples collected after four weeks of vernalization; 4 =  leaf samples collected after nine weeks of vernalization; 5 =  leaf samples collected after seven long days; 6 =  enriched meristem samples collected after nine weeks of vernalization; 7 =  enriched meristem samples collected after one long day; 8 =  enriched meristem samples collected after seven long days.</p

K-means clustering analysis of transcripts differentially expressed in Falster leaf samples.

<p>K = 50 clusters. The <i>x</i> axis presents the sample collection time points: I =  autumn conditions, before the start of vernalization; II = 2 days of vernalization; III = 4 weeks of vernalization; IV = 9 weeks of vernalization; V = 7 days of long day conditions. The <i>y</i> axis corresponds to the variance stabilized data from DESeq. The blue background illustrates vernalization treatment, the pink background illustrates long day conditions.</p

The number of differentially expressed transcripts common and specific for each sample type.

<p>The number of differentially expressed transcripts common and specific for each sample type.</p