The species of white-nest swiftlets (Apodidae, Collocaliini) of Malaysia and the origins of house-farm birds: Morphometric and genetic evidence

The taxonomy of South-East Asian swiftlets (Apodidae, Collocaliini) has proved challenging because of their limited variation in size and plumage colouration. Of particular interest are 'white-nest' swiftlets, whose nests, built almost entirely of hardened secretions from paired sublingual salivary glands, are valued in the edible birds'-nest trade. The natural breeding sites of white-nest swiftlets are caves or grottoes but, for over a century, there has been a progressive increase in numbers occupying man-made structures. Through most of South-East Asia there is now a developed industry, utilising sophisticated practices to attract and retain white-nest swiftlets in purpose-made buildings, known as 'house-farms'-a novel form of domestication. A review of the systematics of wild populations based on museum skins collectedin late nineteenth and early twentieth centuries, before the expansion of house-farms, concludes that there are two largely allopatric species of white-nest swiftlet in Malaysia, identified as Grey-rumped Swiftlet Aerodramus inexpectatus, with subspecies A. i. germani and A. i. perplexus, and Thunberg's or Brown-rumped Swiftlet Aerodramus fuciphagus, with subspecies A. f. fuciphagus and A. f. vestitus. During 2003 to 2010, house-farm swiftlets in southern Thailand, east and west coasts of Peninsular Malaysia, Sarawak, Java and southern East Kalimantan, Indonesia, were photographed to show variability in plumage of the rump. House-farm birds of Sarawak resembled neither of the wild species occurring naturally in the state. Tissue samples from embryos in eggs were collected for genetic studies from house-farms in Medan, Sumatra, west and east coasts of Peninsular Malaysia, and Sibu, Sarawak. Results of phylogenetic analyses, AMOVA and pairwise FST comparison based on the partial cytochrome-b sequence are presented. Of the 11 haplotypes identified, two are restricted to a wild population of Brown-rumped Swiftlets A. f. vestitus of Middle Baram, Sarawak, thereby shown to be genetically distinct from house-farm birds. One haplotype is common among all house-farm birds, two are unique to Medan, three and one to Kuantan and Endau-Rompin, respectively. The birds from Sarawak share haplotypes with all other house-farm populations in Peninsular Malaysia and Medan, Sumatra. The evidence for two clades within house-farm samples indicates that Peninsular Malaysian birds combine genetic components from north (A. inexpectatus germani) and south (A. f. fuciphagus). Sarawak house-farm birds are similar to east coast Peninsular Malaysian populations in plumage characters and genes, and apparently arrived by spontaneous immigration from Peninsular Malaysia. If hybrids have arisen among Malaysian house-farm white-nest swiftlets, they are excluded from regulation by the International Code of Zoological Nomenclature

First discovery of Pleistocene orangutan (Pongo sp.) fossils in Peninsular Malaysia: Biogeographic and paleoenvironmental implications

Nine isolated fossil Pongo teeth from two cave sites in Peninsular Malaysia are reported. These are the first fossil Pongo specimens recorded in Peninsular Malaysia and represent significant southward extensions of the ancient Southeast Asian continental range of fossil Pongo during two key periods of the Quaternary. These new records from Peninsular Malaysia show that ancestral Pongo successfully passed the major biogeographical divide between mainland continental Southeast Asia and the Sunda subregion before 500ka (thousand years ago).If the presence of Pongo remains in fossil assemblages indicates prevailing forest habitat, then the persistence of Pongo at Batu Caves until 60ka implies that during the Last Glacial Phase sufficient forest cover persisted in the west coast plain of what is now Peninsular Malaysia at least ten millennia after a presumed corridor of desiccation had extended to central and east Java. Ultimately, environmental conditions of the peninsula during the Last Glacial Maximum evidently became inhospitable for Pongo, causing local extinction. Following post-glacial climatic amelioration and reforestation, a renewed sea barrier prevented re-colonization from the rainforest refugium in Sumatra, accounting for the present day absence of Pongo in apparently hospitable lowland evergreen rainforest of Peninsular Malaysia. The new teeth provide further evidence that Pongo did not undergo a consistent trend toward dental size reduction over time