8 research outputs found

    Experimental (from literature) and <i>in silico</i> (computed) dissociation constants for the three endogenous tested hormones.

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    <p>DS: Docking Score; ΔG-LM: binding free energy computed through low-mode molecular dynamics simulations; ΔG-MD: binding free energy computed through molecular docking; K<sub>i</sub>: dissociation constant computed from molecular docking data.</p

    Hazard evaluation pipeline for putative androgen disruptors.

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    <p>Step 1: database production; step 2: <i>in silico</i> binding assay; step 3 <i>in vitro</i> binding assay for the selected dataset; step 4: <i>in vitro</i> activity assays only for the high affinity molecules (positive hits); and identification of agonist (α = 1), partial agonist (1<α<0) and antagonist (α = 0) activity.</p

    Binding site features for each of the three selected receptors.

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    <p><i>Size</i> indicates the number of alpha spheres comprising the site. <i>PLB</i> is the Propensity for Ligand Binding score for the contact residues. <i>Hyd</i> indicates the number of hydrophobic contact atoms in the receptor. <i>Side</i> indicates the number of sidechain contact atoms in the receptor.</p
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