27 research outputs found

    Non-additive genome-wide association scan reveals a new gene associated with habitual coffee consumption

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    Coffee is one of the most consumed beverages world-wide and one of the primary sources of caffeine intake. Given its important health and economic impact, the underlying genetics of its consumption has been widely studied. Despite these efforts, much has still to be uncovered. In particular, the use of non-additive genetic models may uncover new information about the genetic variants driving coffee consumption. We have conducted a genome-wide association study in two Italian populations using additive, recessive and dominant models for analysis. This has uncovered a significant association in the PDSS2 gene under the recessive model that has been replicated in an independent cohort from the Netherlands (ERF). The identified gene has been shown to negatively regulate the expression of the caffeine metabolism genes and can thus be linked to coffee consumption. Further bioinformatics analysis of eQTL and histone marks from Roadmap data has evidenced a possible role of the identified SNPs in regulating PDSS2 gene expression through enhancers present in its intron. Our results highlight a novel gene which regulates coffee consumption by regulating the expression of the genes linked to caffeine metabolism. Further studies will be needed to clarify the biological mechanism which links PDSS2 and coffee consumption

    Maternal and paternal lineages in Albania and the genetic structure of Indo-European populations

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    Mitochondrial DNA HV1 sequences and Y chromosome haplotypes (DYS19 STR and YAP) were characterised in an Albanian sample and compared with those of several other Indo-European populations from the European continent. No significant difference was observed between Albanians and most other Europeans, despite the fact that Albanians are clearly different from all other Indo-Europeans linguistically. We observe a general lack of genetic structure among Indo-European populations for both maternal and paternal polymorphisms, as well as low levels of correlation between linguistics and genetics, even though slightly more significant for the Y chromosome than for mtDNA. Altogether, our results show that the linguistic structure of continental Indo-European populations is not reflected in the variability of the mitochondrial and Y chromosome markers. This discrepancy could be due to very recent differentiation of Indo-European populations in Europe and/or substantial amounts of gene flow among these populations

    Behaviour of NTE Material Ag3[Co(CN)6] under Pressure

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    Recent discovery of colossal negative thermal expansion (NTE) behaviour in Silver Hexacyanocobaltate Ag3[Co(CN)6] has triggered interest among researchers to understand the basic mechanism causing such an unusual behaviour. This report presents our results on the behaviour of Ag3[Co(CN)6] using in-situ high pressure Raman and FTIR spectroscopy. The reported trigonal-monoclinic phase transition occurring in this compound is observed at 0.2 GPa. Upon increasing the pressure further, Ag3[Co(CN)6] becomes irreversibly amorphous above 13 GPa.by Pallavi Ghalsasi and Ravi Tripath
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