Changes in the distribution of nesting Arctic seaducks are not strongly related to variation in polar bear presence

Contemporary climate change is predicted to expose some species to altered predation regimes. Losses of Arctic sea ice are causing polar bears to increasingly forage on colonial seaduck eggs in lieu of ice-based hunting of marine mammals. Although polar bear predation of bird eggs has now been widely documented, it is unclear whether this change in predator behavior is having population-level consequences for Arctic breeding birds. In this study, we tested whether changes in the number of common eider nests on 76 islands in Hudson Strait, Canada, were related to variation in polar bear presence. We found that polar bear sign detected during eider breeding surveys was strongly correlated with spatial patterns of polar bears observed during aerial surveys. However, changes in eider nest count did not appear to be clearly related to polar bear sign at either the island scale or the island-cluster scale. This results of this study, therefore, suggest that the spatial overlap between eiders and polar bears varies across the landscape, but patterns of polar bear spatial variation do not seem to have driven large-scale redistribution of nesting common eiders

Polar bears are inefficient predators of seabird eggs

Climate-mediated sea-ice loss is disrupting the foraging ecology of polar bears (Ursus maritimus) across much of their range. As a result, there have been increased reports of polar bears foraging on seabird eggs across parts of their range. Given that polar bears have evolved to hunt seals on ice, they may not be efficient predators of seabird eggs. We investigated polar bears\u27 foraging performance on common eider (Somateria mollissima) eggs on Mitivik Island, Nunavut, Canada to test whether bear decision-making heuristics are consistent with expectations of optimal foraging theory. Using aerial-drones, we recorded multiple foraging bouts over 11 days, and found that as clutches were depleted to completion, bears did not exhibit foraging behaviours matched to resource density. As the season progressed, bears visited fewer nests overall, but marginally increased their visitation to nests that were already empty. Bears did not display different movement modes related to nest density, but became less selective in their choice of clutches to consume. Lastly, bears that capitalized on visual cues of flushing eider hens significantly increased the number of clutches they consumed; however, they did not use this strategy consistently or universally. The foraging behaviours exhibited by polar bears in this study suggest they are inefficient predators of seabird eggs, particularly in the context of matching behaviours to resource density

Semi-automated assembly of high-quality diploid human reference genomes

The current human reference genome, GRCh38, represents over 20 years of effort to generate a high-quality assembly, which has benefitted society. However, it still has many gaps and errors, and does not represent a biological genome as it is a blend of multiple individuals. Recently, a high-quality telomere-to-telomere reference, CHM13, was generated with the latest long-read technologies, but it was derived from a hydatidiform mole cell line with a nearly homozygous genome. To address these limitations, the Human Pangenome Reference Consortium formed with the goal of creating high-quality, cost-effective, diploid genome assemblies for a pangenome reference that represents human genetic diversity. Here, in our first scientific report, we determined which combination of current genome sequencing and assembly approaches yield the most complete and accurate diploid genome assembly with minimal manual curation. Approaches that used highly accurate long reads and parent-child data with graph-based haplotype phasing during assembly outperformed those that did not. Developing a combination of the top-performing methods, we generated our first high-quality diploid reference assembly, containing only approximately four gaps per chromosome on average, with most chromosomes within ±1% of the length of CHM13. Nearly 48% of protein-coding genes have non-synonymous amino acid changes between haplotypes, and centromeric regions showed the highest diversity. Our findings serve as a foundation for assembling near-complete diploid human genomes at scale for a pangenome reference to capture global genetic variation from single nucleotides to structural rearrangements

A draft human pangenome reference

Here the Human Pangenome Reference Consortium presents a first draft of the human pangenome reference. The pangenome contains 47 phased, diploid assemblies from a cohort of genetically diverse individuals. These assemblies cover more than 99% of the expected sequence in each genome and are more than 99% accurate at the structural and base pair levels. Based on alignments of the assemblies, we generate a draft pangenome that captures known variants and haplotypes and reveals new alleles at structurally complex loci. We also add 119 million base pairs of euchromatic polymorphic sequences and 1,115 gene duplications relative to the existing reference GRCh38. Roughly 90 million of the additional base pairs are derived from structural variation. Using our draft pangenome to analyse short-read data reduced small variant discovery errors by 34% and increased the number of structural variants detected per haplotype by 104% compared with GRCh38-based workflows, which enabled the typing of the vast majority of structural variant alleles per sample

Polar bear foraging on common eider eggs: estimating the energetic consequences of a climate-mediated behavioural shift

Climate-mediated phenological shifts can cause species to lose access to their primary prey while increasing opportunities for alternative-prey encounters. Species that are able to capitalize on alternative resources could potentially profit from prey-switching should the benefits of procuring these alternative resources outweigh their acquisition costs. Polar bears, Ursus maritimus, use sea ice as a platform to hunt seals, and individuals inhabiting the southern-most extent of their range rely on accumulated fat reserves to sustain themselves during the increasingly lengthy ice-free season. In response to declining access to their primary prey through documented sea ice loss, some polar bears are foraging on the eggs of birds in lieu of hunting opportunities on ice, as their onshore arrival is increasingly overlapping with birds’ breeding schedules. To gain a better understanding of the energetic consequences of this behaviour, we used aerial drones to record polar bears foraging on sea duck eggs (common eider, Somateria mollissima) on Mitivik Island, Nunavut, Canada. Using these data, we examined variation in individual polar bear foraging behaviours and estimated the energetic benefits and costs associated with foraging on common eider eggs. Because of low costs associated with nest searching and consumption, the energetic cost of foraging remained relatively constant throughout the 2-week observation period. However, we found that as the common eider breeding season progressed, polar bears consumed eggs at a lower rate as they depleted the nesting colony and spent proportionally more time searching for nests. Collectively, this foraging pattern led to an overall declining trend in the net energy gained from egg consumption. Foraging on common eider eggs during increasingly lengthy ice-free seasons is apparently beneficial for polar bears, but only during a limited window of opportunity. By coupling energetic estimates with detailed behavioural data collected through aerial videography, this study provides a quantification of both the benefits and costs of egg consumption for polar bears

Polar bears are inefficient predators of seabird eggs

Climate-mediated sea-ice loss is disrupting the foraging ecology of polar bears (Ursus maritimus) across much of their range. As a result, there have been increased reports of polar bears foraging on seabird eggs across parts of their range. Given that polar bears have evolved to hunt seals on ice, they may not be efficient predators of seabird eggs. We investigated polar bears\u27 foraging performance on common eider (Somateria mollissima) eggs on Mitivik Island, Nunavut, Canada to test whether bear decision-making heuristics are consistent with expectations of optimal foraging theory. Using aerial-drones, we recorded multiple foraging bouts over 11 days, and found that as clutches were depleted to completion, bears did not exhibit foraging behaviours matched to resource density. As the season progressed, bears visited fewer nests overall, but marginally increased their visitation to nests that were already empty. Bears did not display different movement modes related to nest density, but became less selective in their choice of clutches to consume. Lastly, bears that capitalized on visual cues of flushing eider hens significantly increased the number of clutches they consumed; however, they did not use this strategy consistently or universally. The foraging behaviours exhibited by polar bears in this study suggest they are inefficient predators of seabird eggs, particularly in the context of matching behaviours to resource density

Predatory cue use in flush responses of a colonial nesting seabird during polar bear foraging

Nest predation is a primary cause of reproductive failure in birds; thus, predators apply strong selective pressure on nesting behaviour, especially risk assessment behaviours during predator encounters at nests. Prey\u27s risk assessments are not static; rather, dynamic risk assessment theory predicts that prey assess risk in real-time and update it according to changes in cues posed by the predator(s). We used drone videography to film nest-flushing behaviours of common eiders, Somateria mollissima, in response to foraging polar bears, Ursus maritimus, on East Bay Island (Nunavut, Canada). We assessed how cue use influenced flushing behaviour and nest fate in a path analysis using 200 observations of 193 eiders in 2017. Our most supported model found that more direct angles of visual gaze and travel angle by polar bears resulted in conspicuous nest flushes by eiders (β = −0.236 ± 0.059), whereas the presence of herring gulls, Larus argentatus, resulted in more discrete flushes of hens walking from their nests (β = −0.181 ± 0.059). Shorter flush initiation distances between eiders and approaching bears resulted in greater nest predation by polar bears (β = −0.203 ± 0.076). We found no support that an eider\u27s visibility from the nest influenced any component of flushing behaviour. We suggest that during encounters with bears, eiders are capable of assessing risk and making appropriate behavioural decisions to reduce the chances of nest loss. However, as the colony experienced heavy predation by bears in 2017, behavioural responses alone appear to be insufficient to mitigate polar bear predation at the population level