Additional file 9: Table S15. of Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

Proportion of variation explained by the first two principal components at different taxonomic levels and contribution of top members to the first two principal components, using unrarefied microbiome data. (PDF 47 kb

Additional file 11: Figure S3. of Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

Calinski-Harabasz indexes (CH) for number of potential clusters of samples at weaning, week 15, and off-test, using unrarefied microbiome data. (PDF 174 kb

Additional file 8: Table S14. of Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

Effects and standard errors of family and time on alpha diversity estimated from model (1). (PDF 19 kb

Additional file 1: Table S1. of Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

Diet formulae and their nutritional values. (PDF 70 kb

Additional file 4: Table S6. of Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

Proportion of OTU counts at weaning, week 15, and off-test by phylum. Table S7. Proportion of OTU counts at weaning, week 15, and off-test by class. Table S8. Proportion of OTU counts at weaning, week 15, and off-test by order. Table S9. Proportion of OTU counts at weaning, week 15, and off-test by family. Table S10. Proportion of OTU counts at weaning, week 15, and off-test by genus. Table S11. Proportion of OTU counts at weaning, week 15, and off-test by species. (PDF 141 kb

Additional file 2 of Analysis of polygenic selection in purebred and crossbred pig genomes using generation proxy selection mapping

Additional file 2: Table S2: Number of SNPs significantly associated with AGE for each subset using five replicates of randomly simulated genotype data

Additional file 1 of Analysis of polygenic selection in purebred and crossbred pig genomes using generation proxy selection mapping

Additional file 1: Table S1: Proportion of variation in AGE explained by SNPs for each purebred subset using five replications of randomly simulated genotype data

Additional file 6: Figure S1. of Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth

Sample flow between enterotypes through weaning, week 15, and off-test. (PDF 46 kb

Additional file 3 of Analysis of polygenic selection in purebred and crossbred pig genomes using generation proxy selection mapping

Additional file 3: Table S3: Population, chromosome, SNP effect, Q-value, gene identifier, associated human traits, and associated pig traits for SNPs associated with AGE from GPSM analyses